View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_high_7 (Length: 411)
Name: NF7299_high_7
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 387
Target Start/End: Complemental strand, 35239873 - 35239506
Alignment:
| Q |
23 |
aagaaaacattaatgttcatctacatcttcgattagatcaccaagttcaattcggtgaccatgttgtgcttgttggatcaaccaaaaagttgggctcctg |
122 |
Q |
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| T |
35239873 |
aagaagacattaatgttcatctacatcttcgattagatcaccaagttcaattcggtgaccatgttgtgcttcttggatcaaccaaacagttgggctcctg |
35239774 |
T |
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| Q |
123 |
gaccacccatgttcccttgaattggacaccaaatggttgggtatgcgacttccatttcaacgccggcgatcaccttgaattcaaattcatcattgtccac |
222 |
Q |
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| T |
35239773 |
gaccacccatgttcccttgaattggacaccaaatggttgggtatgcgacttccatttcaacgccggcgatcaccttgaattcaaattcatcattgtccac |
35239674 |
T |
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| Q |
223 |
caggatggcactttacactgggaatctggggacaacagagtattaaacttgcccaatgttggtcattttcaaaccattgccaaatggaacaaaacacacc |
322 |
Q |
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| T |
35239673 |
caggatggcactttacactgggaatctggggacaacagagtattaaacttgcccaatgctggtcattttcagaccattgccaaatggaacaaaacacacc |
35239574 |
T |
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| Q |
323 |
agactatggagttacttcctttgaatttcaatgaacaac---aacatcaaagccacgaccatgaccag |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35239573 |
agactatggagttacttcctttgaatttcaatgaacaacaacaacatcaaagccacgaccatgaccag |
35239506 |
T |
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