View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7299_low_1 (Length: 635)

Name: NF7299_low_1
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7299_low_1
NF7299_low_1
[»] chr4 (5 HSPs)
chr4 (17-629)||(48960696-48961308)
chr4 (309-622)||(48957841-48958154)
chr4 (308-623)||(48965025-48965340)
chr4 (331-436)||(48967177-48967282)
chr4 (570-622)||(48974076-48974128)
[»] chr5 (2 HSPs)
chr5 (315-503)||(28385037-28385225)
chr5 (315-496)||(12540388-12540569)
[»] chr2 (3 HSPs)
chr2 (332-496)||(13448083-13448247)
chr2 (335-506)||(13454557-13454728)
chr2 (332-502)||(13439920-13440090)
[»] chr8 (1 HSPs)
chr8 (318-497)||(12641775-12641954)
[»] chr7 (1 HSPs)
chr7 (315-574)||(3417744-3418003)
[»] chr6 (1 HSPs)
chr6 (544-607)||(12590356-12590419)


Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 17 - 629
Target Start/End: Original strand, 48960696 - 48961308
Alignment:
Q  17 tatacaaccaaaaccatatcaataaaatagatcaaccaaaagtttgaatataaacatcaacataaaaacacgatgaaaattgacaataatatgcatgatc 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48960696 tataaaaccaaaaccatatcaataaaatagatcaaccaaaagtttgaatataaacatcaacataataacacgatgaaaattgacaataatatgcatgatc 48960795  T
Q  117 tgaaacaaacttaataattttactgactaaatttcaaagtagttgagaaaaacaaatctgaaattcatagtaaatttgtcagagtagcaatgtagttact 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48960796 tgaaacaaacttaataattttactgactaaatttcaaagtagttgagaaaaacaaatctgaaattcatagtaaatttgtcagagtagcaatgtaattact 48960895  T
Q  217 cttcagtaatcttcattgatttgagagtctttgggaaaatgttgcacaatcacgatccacacaaggacaatgcttcttcaaagagggagttattgaacta 316  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48960896 cttcagcaatcttcattgatttgagagtctttgggaaaatgttgcacaatcacgatacacacaaggacaatgcttcttcaaagagggagttattgaacta 48960995  T
Q  317 atcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagcctta 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48960996 atcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagcctta 48961095  T
Q  417 tccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttgttgatcacct 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48961096 tccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttgttgatcacct 48961195  T
Q  517 tatttctctcttcaataccatccacccaccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttc 616  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  48961196 tatttctctcttcaataccatccacacaccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttc 48961295  T
Q  617 ttcatgtacgggc 629  Q
    | |||||||||||    
T  48961296 tccatgtacgggc 48961308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 309 - 622
Target Start/End: Original strand, 48957841 - 48958154
Alignment:
Q  309 ttgaactaatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcata 408  Q
    ||||| |||||||||| ||| | || ||||| |  ||||||||||||||| |||| || |||||| ||||||||||| || ||| |||||||||||| |     
T  48957841 ttgaattaatcaagtgtcttgcagtttctcatttgtttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtg 48957940  T
Q  409 tagccttatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttgtt 508  Q
    ||||||| || || |||||| |||||||| || | || || || |||||||||||||||||||| ||| |  |||| ||||| |||||| |||||||  |    
T  48957941 tagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttact 48958040  T
Q  509 gatcaccttatttctctcttcaataccatccacccaccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtag 608  Q
     |  | ||| | | |||| |||| ||| |  || ||||| |||| ||||||||| || |  ||||| ||  |||||| ||||||||||||||| ||||||    
T  48958041 cacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtag 48958140  T
Q  609 aattcttcttcatg 622  Q
    |||| |||| ||||    
T  48958141 aattgttctccatg 48958154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 623
Target Start/End: Original strand, 48965025 - 48965340
Alignment:
Q  308 attgaactaatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcat 407  Q
    ||||| ||| |||| |||||| || |||||||||||||| ||||||||||| || || | |||||| |||||||| ||||| ||| ||||||  |||| |    
T  48965025 attgagctactcaattggcttgctatctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgt 48965124  T
Q  408 atagccttatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttgt 507  Q
     ||||||| || ||||||||| ||||||| | ||| || |  || ||||||||||||| |||||| ||| | ||||| |||||||||||  ||||  |      
T  48965125 ctagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactac 48965224  T
Q  508 tgatcaccttatttctctcttcaataccatccacccaccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgta 607  Q
    | | || ||| | ||| ||||||| ||||  ||  |||||||||| |||||||||||| | |||||| ||  |||| || |||||||  || ||||||||    
T  48965225 tcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgta 48965324  T
Q  608 gaattcttcttcatgt 623  Q
    ||||| |||| |||||    
T  48965325 gaattgttctccatgt 48965340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 48967177 - 48967282
Alignment:
Q  331 tgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcg 430  Q
    ||||||||| |||||||||||||||||| ||||| || |||||||||| |||  |||| ||| ||||||  |||| | ||||||| || ||||| |||||    
T  48967177 tgtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcg 48967276  T
Q  431 agcacg 436  Q
    ||||||    
T  48967277 agcacg 48967282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 622
Target Start/End: Original strand, 48974076 - 48974128
Alignment:
Q  570 ccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatg 622  Q
    ||||||||| |||| | |||||||||||||||||||||||||| ||| |||||    
T  48974076 ccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatg 48974128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 315 - 503
Target Start/End: Original strand, 28385037 - 28385225
Alignment:
Q  315 taatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagcct 414  Q
    |||||| |||| || |||||||||||||||||||| || || |||||||| | ||||||||||| ||| || || ||| ||| |||||||| | ||||||    
T  28385037 taatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagcct 28385136  T
Q  415 tatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatct 503  Q
    | || || ||||||||||||||  |||| |||| ||| |||||||| ||||||||||| ||||| ||||  ||||||||||| ||||||    
T  28385137 tctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatct 28385225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 315 - 496
Target Start/End: Original strand, 12540388 - 12540569
Alignment:
Q  315 taatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagcct 414  Q
    |||||| ||||||| | |||||| ||||||||||  || || || ||||  | ||||||||||||||| || || ||| |||||||||||| | ||||||    
T  12540388 taatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagcct 12540487  T
Q  415 tatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 496  Q
    | || |||| |||||| |||||  |||| |||| ||| ||||||| |||||| ||||| ||| | ||||  |||||||||||    
T  12540488 tctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctat 12540569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 496
Target Start/End: Original strand, 13448083 - 13448247
Alignment:
Q  332 gtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 431  Q
    ||||||| |||||||||| || ||||| ||||||| ||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  13448083 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctccaaactctcga 13448182  T
Q  432 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 496  Q
    |||||  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||    
T  13448183 gcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctat 13448247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 335 - 506
Target Start/End: Original strand, 13454557 - 13454728
Alignment:
Q  335 tctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcgagca 434  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||| |||  ||||| ||||  | ||||||| || |||||||||||||||    
T  13454557 tctcaatcttttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagca 13454656  T
Q  435 cgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttg 506  Q
    ||    || |||| ||  ||||||||||||||| |||| ||| | ||||| |||||||||||  ||||||||    
T  13454657 cgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttg 13454728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 332 - 502
Target Start/End: Original strand, 13439920 - 13440090
Alignment:
Q  332 gtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 431  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||| ||| ||||| ||| |||||| ||||  | ||||||| || ||||||||| ||    
T  13439920 gtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttga 13440019  T
Q  432 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatc 502  Q
    ||| |  | || |||| ||  ||||||||||||   ||||| ||| | ||||| ||||||||||| |||||    
T  13440020 gcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatc 13440090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 497
Target Start/End: Complemental strand, 12641954 - 12641775
Alignment:
Q  318 tcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagccttat 417  Q
    |||||||| || | ||||||| ||||||||||||| | ||| ||||||| |||||| |||||||| || |||||| ||| ||||||   | ||||||| |    
T  12641954 tcaagtggtttgcggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttt 12641855  T
Q  418 ccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctata 497  Q
     |||||||||| |||||||  |||| || || |  |||||||||||| ||||||| ||| | ||||| || |||||||||    
T  12641854 tcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctata 12641775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 315 - 574
Target Start/End: Complemental strand, 3418003 - 3417744
Alignment:
Q  315 taatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccagcaaattattatgagatgagccgcctacttgaacagctcatatagcct 414  Q
    |||||||||||||| | |||||||||  ||||||| || || || ||||  | |||||||| ||| || || || ||| |||||| ||||| | ||||||    
T  3418003 taatcaagtggcttgcagtctctcaactttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagcct 3417904  T
Q  415 tatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctatattatctttgttgatcac 514  Q
    | || |||| ||||||||||||  |||| ||| |||| || ||||||| || |||||| ||| | |||| |||||||||||| | |||| || | | ||     
T  3417903 tctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctcaccaa 3417804  T
Q  515 cttatttctctcttcaataccatccacccaccattctgctgcaccaacttcaattccaat 574  Q
    ||| ||||||||  |||||||||   | | |||||||| |||||| ||||| | ||||||    
T  3417803 cttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaat 3417744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 607
Target Start/End: Complemental strand, 12590419 - 12590356
Alignment:
Q  544 accattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgta 607  Q
    |||| |||| |||||||||||| | |||||| || ||||||||||||||||||||||| |||||    
T  12590419 accaatctgttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgta 12590356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University