View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_low_10 (Length: 381)
Name: NF7299_low_10
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 2181887 - 2181542
Alignment:
| Q |
13 |
aatatcacatcaatatctcttttttcttctatgtctcaaggtgtatacacccacat--ggggtacacaaaacattttccttattttcagtgtttctatga |
110 |
Q |
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| T |
2181887 |
aatatcacatcaatatctcttttttcttctatgtttcaaggtatatacaccagcctgaggtgtacacaaaacattttccttattttcagtgtttctatga |
2181788 |
T |
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| Q |
111 |
attaaaagtcatcttcaaaccatcaaggtgctcgaattaacataactacaattaagtccaaattcattctgtaagtcgtaagaaaaggtctaaatccttt |
210 |
Q |
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|||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
2181787 |
attaaaagccatcttcaagccatcaagatgctcgaattaacataactacaactaagtccaaattcactccgtaagtcgtaagaaaaggtctaaatccttt |
2181688 |
T |
|
| Q |
211 |
cg-aaagatcttgtatattcattttactttgttcctaaatannnnnnnggtggtgctttgttcctaaatttcccc-gggattaatttttaaattttaatt |
308 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
2181687 |
cgaaaagatcttgtatattcattttactttgttcctaaatatttttttggtggtgctttgttcctaaatttccccggggattaattttaaaattttaatt |
2181588 |
T |
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| Q |
309 |
gcgttaactattcccttacaaattaaaaagtatagttaaataataa |
354 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2181587 |
gcgttaactattcccttacaaattaaaaagtatacttaaataataa |
2181542 |
T |
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