View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_low_11 (Length: 355)
Name: NF7299_low_11
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_11 |
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| [»] scaffold0702 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 106 - 349
Target Start/End: Complemental strand, 35194254 - 35194013
Alignment:
| Q |
106 |
gtttgtaatcagcaaaaa---gtgcgggcgactcttgtgattgtgaagtttaagttaaggctcccacattatcgtcgtactacattacatattcactaaa |
202 |
Q |
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| T |
35194254 |
gtttgtaatcagcaaaagtgcgggcgggcgtctcttgtgattgtgaagtt-aagttaaggctcccacattatcgtcgtactacattacatattcactaaa |
35194156 |
T |
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| Q |
203 |
tcaatttaaagattctcaaccgctgatttaaattatatggacagacaggatctaactgcgtgatgcggttgctgctagaaatccatttcccaacactcca |
302 |
Q |
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| T |
35194155 |
tcaatttaaacattatcaaccgctgatttaaattataaggacag----gttctaactgcgtgatgcggttgctgctagaaatccatttcccaacactcca |
35194060 |
T |
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| Q |
303 |
aacaagagaaaaccaccaacaaagttcctccctacatgaactccaaa |
349 |
Q |
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| T |
35194059 |
aacaagagaaaaccaccaaaaaagttcctccctacatgaactccaaa |
35194013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 6169 - 6026
Alignment:
| Q |
106 |
gtttgtaatcagcaaaaa---gtgcgggcgactcttgtgattgtgaagtttaagttaaggctcccacattatcgtcgtactacattacatattcactaaa |
202 |
Q |
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||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6169 |
gtttgtaatcagcaaaagtgcgggcgggcgtctcttgtgattgtgaagtt-aagttaaggctcccacattatcgtcgtactacattacatattcactaaa |
6071 |
T |
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| Q |
203 |
tcaatttaaagattctcaaccgctgatttaaattatatggacaga |
247 |
Q |
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| T |
6070 |
tcaatttaaacattatcaaccgctgatttaaattataaggacaga |
6026 |
T |
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