View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7299_low_13 (Length: 298)

Name: NF7299_low_13
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7299_low_13
NF7299_low_13
[»] chr4 (12 HSPs)
chr4 (19-281)||(3810018-3810280)
chr4 (109-281)||(4218735-4218907)
chr4 (19-281)||(3986997-3987259)
chr4 (73-281)||(3817640-3817848)
chr4 (90-273)||(3932848-3933031)
chr4 (19-281)||(4009998-4010260)
chr4 (90-243)||(3919654-3919807)
chr4 (109-273)||(3801678-3801842)
chr4 (19-223)||(4025228-4025432)
chr4 (19-280)||(4002301-4002562)
chr4 (91-197)||(3954368-3954474)
chr4 (150-194)||(3963223-3963267)
[»] scaffold1360 (1 HSPs)
scaffold1360 (150-273)||(1843-1966)
[»] chr5 (1 HSPs)
chr5 (22-280)||(13397955-13398213)
[»] chr8 (1 HSPs)
chr8 (150-197)||(7069135-7069182)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 3810018 - 3810280
Alignment:
Q  19 ttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccacgaaacaacaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3810018 ttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccaagaaacaacaac 3810117  T
Q  119 catcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3810118 catcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccacccataccccaaattccgataacaggggccttttgtga 3810217  T
Q  219 ctctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagttcttttga 281  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3810218 ctctttctttaacaatgatttcaaatgtgaaatagatttgtcaattccaacaagttcttttga 3810280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 109 - 281
Target Start/End: Original strand, 4218735 - 4218907
Alignment:
Q  109 aaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacagggg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||     
T  4218735 aaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccaataacacgga 4218834  T
Q  209 ccttttgtgactctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagttcttttga 281  Q
    |||||   |||||||| ||||||||||| |||||||||| ||| | |||||| ||||||| |||| |||||||    
T  4218835 cctttcccgactctttgtttaacaatgaattcaaatgtgcaattggtttgtccattccaataagtccttttga 4218907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 3986997 - 3987259
Alignment:
Q  19 ttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccacgaaacaacaac 118  Q
    ||||||||||| ||||||| ||||| ||||||  | | ||||||||| || |||||||||  | |||||| |||||| |||||| |||  ||||||||||    
T  3986997 ttcacatcttcggccaatattttagtaaaaagggtttcttttaaagattctattccatgtaattttaacttttcactcacctttgccaaaaaacaacaac 3987096  T
Q  119 catcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtga 218  Q
    ||||||||||||| | | |||||| ||| | ||||| ||||||||||||||||||||| ||   ||||||||||||||| || ||| || ||||||||||    
T  3987097 catcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggcataccccaaattccaatcacacggaccttttgtga 3987196  T
Q  219 ctctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagttcttttga 281  Q
    |||||||||||||||||| || ||||||| ||| |||||||||||||||| |||| |||||||    
T  3987197 ctctttctttaacaatgaatttaaatgtgcaattgatttgtcaattccaataagtccttttga 3987259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 281
Target Start/End: Original strand, 3817640 - 3817848
Alignment:
Q  73 ccatgtcttgttaactcttcacttaccttttccacgaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgc 172  Q
    |||||| || |||||  |||||| |||||||||| |||||||||||||||||| || |||| | |||||  ||||| ||||| |||||||||||||||||    
T  3817640 ccatgtgtttttaacctttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgc 3817739  T
Q  173 caataccgcccataccccaaattccgataacaggggccttttgtgactctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaag 272  Q
    ||||||||||||| ||||||||||| |||||| || ||| || ||||||||||||||||||||| |||||||  | ||| | ||||||||||||||||||    
T  3817740 caataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatccgcaattggtttgtcaattccaacaag 3817839  T
Q  273 ttcttttga 281  Q
    |||||||||    
T  3817840 ttcttttga 3817848  T

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Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 3933031 - 3932848
Alignment:
Q  90 ttcacttaccttttccacgaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccc 189  Q
    |||||| |||||||||| |||||||||||||||||| || |||| | |||||  ||||| ||||| |||||||||||||||||||||||||||||| |||    
T  3933031 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3932932  T
Q  190 caaattccgataacaggggccttttgtgactctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagt 273  Q
    |||||||| |||||| || ||| || ||||||||||||||||||||| ||||||| || ||| | |||||||||||||||||||    
T  3932931 caaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtttgtcaattccaacaagt 3932848  T

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Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 4009998 - 4010260
Alignment:
Q  19 ttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccacgaaacaacaac 118  Q
    |||||||||||||| |||||| ||||||||||||| | ||| ||| |     |||||||||||  ||| |  || |||||||||||||  ||||||||||    
T  4009998 ttcacatcttctgctaatagtgtagaaaaaagtttttctttcaaaaatgttcttccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaac 4010097  T
Q  119 catcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtga 218  Q
    | ||||||||||| ||| |||||| ||| | ||||  |||||||||||||||||||||||  ||||| ||||||||||| || |||  | |||||| |||    
T  4010098 cttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatgccccaaattccaatgacactgaccttttctga 4010197  T
Q  219 ctctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagttcttttga 281  Q
    |||||| | ||||||||| |||||||||| ||| |||||||||||||||| |||| |||||||    
T  4010198 ctctttttgtaacaatgaattcaaatgtgcaattgatttgtcaattccaataagtccttttga 4010260  T

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Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 3919807 - 3919654
Alignment:
Q  90 ttcacttaccttttccacgaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccc 189  Q
    |||||| |||||||||| |||||||||||||||||| || |||| | |||||  ||||| ||||| |||||||||||||||||||||||||||||| |||    
T  3919807 ttcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgccc 3919708  T
Q  190 caaattccgataacaggggccttttgtgactctttctttaacaatgatttcaaa 243  Q
    |||||||| |||||| || ||| || ||||||||||||||||||||| ||||||    
T  3919707 caaattccaataacacggacctgttctgactctttctttaacaatgaattcaaa 3919654  T

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Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 109 - 273
Target Start/End: Original strand, 3801678 - 3801842
Alignment:
Q  109 aaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacagggg 208  Q
    ||||||||||||||||||||| | | | |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||     
T  3801678 aaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaaattccaataacacgga 3801777  T
Q  209 ccttttgtgactctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagt 273  Q
    |||||   |||||||| ||||||||||| |||||||||| ||| | | |||| ||||||| ||||    
T  3801778 cctttcccgactctttgtttaacaatgaattcaaatgtgcaattggtctgtccattccaataagt 3801842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 4025228 - 4025432
Alignment:
Q  19 ttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccacgaaacaacaac 118  Q
    |||||||||||||| |||||| ||||||||||||| | ||| ||| |    ||||||||||||  ||| ||||||||||||||| |||  ||||||||||    
T  4025228 ttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttcacttacctttgccaaaaaacaacaac 4025327  T
Q  119 catcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtga 218  Q
    | ||||||||||| ||| |||| | ||| | |||||  ||||||||||||||||||||||| ||||||||||||||||| |||||| |  |||||| |||    
T  4025328 cttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacacgaaccttttctga 4025427  T
Q  219 ctctt 223  Q
    |||||    
T  4025428 ctctt 4025432  T

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Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 4002301 - 4002562
Alignment:
Q  19 ttcacatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccacgaaacaacaac 118  Q
    |||||||||||||| |||||| |||||||||| || | ||||||| |    |||||||| |||  | | |||||||||||||||||||  |||||| |||    
T  4002301 ttcacatcttctgctaatagtgtagaaaaaagcttttcttttaaaaatgttattccatgccttcctgattcttcacttaccttttccaaaaaacaaaaac 4002400  T
Q  119 catcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtga 218  Q
    | ||||||||||| ||| || ||| ||| | |||||  ||||||||||||||||||||||| ||||||||||||||||| || ||| || |||||| | |    
T  4002401 cttcatattcagagcaacttcggttaaaaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacggaccttttctaa 4002500  T
Q  219 ctctttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagttcttttg 280  Q
    || ||    |||||||||||  ||||||| ||  | |||| ||||||||| |||| ||||||    
T  4002501 ctgttgacgtaacaatgattctaaatgtgcaactggtttgccaattccaataagtccttttg 4002562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 3954474 - 3954368
Alignment:
Q  91 tcacttaccttttccacgaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccatacccc 190  Q
    ||||| |||||| |||  ||||||||||| ||||||||||| ||| || ||| | | | |||||  ||||||||||||||||||||||| ||||||||||    
T  3954474 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagcaatagttgtcttgccaatacctcccatacccc 3954375  T
Q  191 aaattcc 197  Q
    |||||||    
T  3954374 aaattcc 3954368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 3963267 - 3963223
Alignment:
Q  150 ttcttttgcaatagttgtcttgccaataccgcccataccccaaat 194  Q
    ||||| |||||  ||||||||||||||||| ||||||||||||||    
T  3963267 ttcttctgcaagggttgtcttgccaataccacccataccccaaat 3963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 1966 - 1843
Alignment:
Q  150 ttcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtgactctttctttaacaatgatttcaaatgtgta 249  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| || ||| || ||||||||||||||||||||| ||||||| || |    
T  1966 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgca 1867  T
Q  250 atagatttgtcaattccaacaagt 273  Q
    || | |||||||||||||||||||    
T  1866 attggtttgtcaattccaacaagt 1843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 13397955 - 13398213
Alignment:
Q  22 acatcttctgccaatagtttagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccacgaaacaacaaccat 121  Q
    ||||||||||| |||||| |||||| ||| || | ||||||| |  | |||||||| |||  ||| |||||||| |||||| |||  |||||||| || |    
T  13397955 acatcttctgctaatagtgtagaaacaagcttttcttttaaaaacgctattccatgccttcctaattcttcactcacctttgccaaaaaacaacatcctt 13398054  T
Q  122 catattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccgataacaggggccttttgtgactc 221  Q
    ||||||||||||||||||| | ||| | |||||  |||||||||||||| |||||||| |||||||||||||| || || ||  |  |||||| ||||||    
T  13398055 catattcagaacaaatttgattaaaaatttcttcggcaatagttgtctttccaatacctcccataccccaaataccaattacgcgaaccttttctgactc 13398154  T
Q  222 tttctttaacaatgatttcaaatgtgtaatagatttgtcaattccaacaagttcttttg 280  Q
    ||  | |||||||| ||  ||||||| ||| | ||| |||||||||| |||| ||||||    
T  13398155 ttgatgtaacaatggttctaaatgtgcaattgctttctcaattccaataagtccttttg 13398213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 7069135 - 7069182
Alignment:
Q  150 ttcttttgcaatagttgtcttgccaataccgcccataccccaaattcc 197  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||||||    
T  7069135 ttcttctgcaatagttgtctttccaataccactcataccccaaattcc 7069182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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