View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_low_18 (Length: 242)
Name: NF7299_low_18
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 2464247 - 2464046
Alignment:
| Q |
23 |
gtttaattcacaggctaaatcatttttgatcacttcacttgctactcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctag |
122 |
Q |
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|||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2464247 |
gtttaattcacaggctgcattaattttgatcacttcacttgcttttcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctag |
2464148 |
T |
|
| Q |
123 |
taccagaaccttattactccttgaataaacaagcataaaagatagaattctaggctactttactaataccattagggtaactagattttggggaatcaat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2464147 |
taccagaaccttattactccttgaataaacaagcataaaagatagcattctaggctactttactaataccattagggtaactagatttaggggaatcaat |
2464048 |
T |
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| Q |
223 |
tc |
224 |
Q |
| |
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|| |
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| T |
2464047 |
tc |
2464046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 24207447 - 24207591
Alignment:
| Q |
52 |
tcacttcacttgctactcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttg-aataa |
150 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||| ||||| |
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| T |
24207447 |
tcacttcacttgctattcaatctctcatcacctagttacaatttaatattgatttttatcatgtatgctagtattagaaccttattatttcttgaaataa |
24207546 |
T |
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| Q |
151 |
acaagcataaaagatagaattctaggctactttactaataccatt |
195 |
Q |
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| T |
24207547 |
agaagcataaaagatagcattctaggctaccttactaataccatt |
24207591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 15695332 - 15695155
Alignment:
| Q |
47 |
tttgatcacttcacttgctactcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttga |
146 |
Q |
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|||||||||||||||| ||| |||| ||||||||||||||||||| |||| |||||| ||||| |||||||||||||| ||||| |||| ||||| ||| |
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| T |
15695332 |
tttgatcacttcacttactattcaatctctcatcacctagttacattttcatattgacttttagcatgtatgctagta-tagaacattataactccctga |
15695234 |
T |
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| Q |
147 |
ataaacaagcat-aaaagatagaattctaggctactttactaataccattagggtaactagattttggggaatcaattc |
224 |
Q |
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|||||| ||||| |||| |||| |||| || |||| |||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
15695233 |
ataaacgagcataaaaaaatagcattcgagactaccgtactaataccattagggtaactagattttgggaaataaattc |
15695155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 15702312 - 15702135
Alignment:
| Q |
47 |
tttgatcacttcacttgctactcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttga |
146 |
Q |
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|||||||||||||||| ||| |||| ||||||||||||||||||| |||| |||||| ||||| |||||||||||||| ||||| |||| ||||| ||| |
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| T |
15702312 |
tttgatcacttcacttactattcaatctctcatcacctagttacattttcatattgacttttagcatgtatgctagta-tagaacattataactccctga |
15702214 |
T |
|
| Q |
147 |
ataaacaagcat-aaaagatagaattctaggctactttactaataccattagggtaactagattttggggaatcaattc |
224 |
Q |
| |
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|||||| ||||| |||| |||| |||| || |||| |||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
15702213 |
ataaacgagcataaaaaaatagcattcgagactaccgtactaataccattagggtaactagattttgggaaataaattc |
15702135 |
T |
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