View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_low_22 (Length: 201)
Name: NF7299_low_22
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 43526699 - 43526521
Alignment:
| Q |
1 |
aaacactgacctacctggtctttgattttcctgtagtccattttagttagtatcgcaagaaaagagaagatcgatctacagacaagcacttgaattcgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43526699 |
aaacactgacctacctggtctttgattttcctgtagtccattttagttagtatcgcaagaaaagagaagatcgatctacagacagacacttgaattcgtt |
43526600 |
T |
|
| Q |
101 |
caaaccctacacaacacaccacgcattctaattctttttccaattcaattcaattccaacactcagatagatagataga |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43526599 |
caaaccctacacaacacaccacgcattctaattctttttccaattcaattcaattacaacactcagatagatagataga |
43526521 |
T |
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