View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7299_low_4 (Length: 504)

Name: NF7299_low_4
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7299_low_4
NF7299_low_4
[»] chr4 (4 HSPs)
chr4 (126-504)||(2464365-2464744)
chr4 (225-363)||(6736516-6736645)
chr4 (21-95)||(2464268-2464343)
chr4 (21-95)||(6736769-6736844)
[»] chr7 (2 HSPs)
chr7 (126-311)||(26300141-26300326)
chr7 (472-504)||(26300105-26300137)
[»] chr2 (7 HSPs)
chr2 (226-504)||(11951637-11951915)
chr2 (225-504)||(2743968-2744244)
chr2 (260-363)||(28173413-28173516)
chr2 (27-95)||(45682283-45682352)
chr2 (21-95)||(2743769-2743844)
chr2 (29-95)||(11951464-11951531)
chr2 (384-464)||(28173539-28173620)
[»] scaffold0312 (2 HSPs)
scaffold0312 (226-504)||(18990-19263)
scaffold0312 (27-95)||(18778-18847)
[»] chr1 (2 HSPs)
chr1 (226-504)||(411307-411580)
chr1 (27-95)||(411723-411792)
[»] chr3 (3 HSPs)
chr3 (140-504)||(29896538-29896893)
chr3 (144-464)||(45227650-45227974)
chr3 (27-95)||(45227492-45227561)
[»] chr6 (3 HSPs)
chr6 (225-504)||(29935083-29935360)
chr6 (21-66)||(33296250-33296295)
chr6 (21-66)||(29934884-29934929)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 126 - 504
Target Start/End: Original strand, 2464365 - 2464744
Alignment:
Q  126 gaactgtggtggttgaactttatgtatgactaagcattggtttatgctaaagatttttgttgaataatgttgacttggatattgcacgtacnnnnnnnna 225  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |||         |    
T  2464365 gaactgtggtggttgaactttatgtatgactaaccgttggtttatgctaaagatttttgtcgaataatgttgacttggatattgcatgta-tttttttta 2464463  T
Q  226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtc 325  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2464464 gcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtc 2464563  T
Q  326 atgctcccattgaattcttgtgactcaccatttctttgtattca--nnnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatctttac 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||||||||| |||||||||    
T  2464564 atgctcccattgaattcttgtgactcaccatttctttgtattcattttatttttattcacagtttgcaaaggattaatctcttggagttttcatctttac 2464663  T
Q  424 caaagacatctatgctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
    | ||||||||||||||||||||||||||||||| |||||||       ||||||| |||||| ||||||||||||||||||    
T  2464664 cgaagacatctatgctctgcggtagatctctagcttgaccatttttttgtgatttacttatgatgtaactattgagataat 2464744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 363
Target Start/End: Complemental strand, 6736645 - 6736516
Alignment:
Q  225 agcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgt 324  Q
    |||||||||  | ||||||||||||||| |||||||||||||||||||||| |||||||||         ||||| | ||||||| || |||||||||||    
T  6736645 agcatgaatttgctttcaaaggatgaaacttttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtttgt 6736555  T
Q  325 catgctcccattgaattcttgtgactcaccatttctttg 363  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  6736554 catgctcccgttgaattcttgtgactcaccatttctttg 6736516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 2464268 - 2464343
Alignment:
Q  21 tcgccgcaacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  2464268 tcgccacaacgaagagataatgtggtttatgtacaaatagtgaaaagagataaatgatattagtcgtgttgaaatg 2464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 6736844 - 6736769
Alignment:
Q  21 tcgccgcaacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||| ||||||||||    
T  6736844 tcgccacaacgaagagataatatggtttatgtacaaatagtgaaaagagataaatgatattagtcatgttgaaatg 6736769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 126 - 311
Target Start/End: Complemental strand, 26300326 - 26300141
Alignment:
Q  126 gaactgtggtggttgaactttatgtatgactaagcattggtttatgctaaagatttttgttgaataatgttgacttggatattgcacgtacnnnnnnnna 225  Q
    |||||||| ||||| |||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||         |    
T  26300326 gaactgtgatggttaaactttatgtatgactaaccgttgatttatgctaaagatttttgtcgaataatgttgacttggatattgcacgtattttttttta 26300227  T
Q  226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  26300226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatgaccgatgaaaacttcactcatccattatgt 26300141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 504
Target Start/End: Complemental strand, 26300137 - 26300105
Alignment:
Q  472 gtgattttcttatggtgtaactattgagataat 504  Q
    |||||||||||||||||||||||||||||||||    
T  26300137 gtgattttcttatggtgtaactattgagataat 26300105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 9e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 226 - 504
Target Start/End: Original strand, 11951637 - 11951915
Alignment:
Q  226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccatt--atgtccactttgtttg 323  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||| |||  ||||||||||||||||    
T  11951637 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatctattaaatgtccactttgtttg 11951736  T
Q  324 tcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatctttac 423  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||        ||| | || ||||||| |||||||||| |||||||| ||| || ||    
T  11951737 tcatgctcccattgaattattgtgactcaccatttctttggtttcattttttcaattcaaaggttgcaaatgattaatctcatggagttttcatgttcac 11951836  T
Q  424 caaagacatctatgctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
     ||| ||||||||||| |||||||||||||||  |||||||        |||||| |||||| ||||||||||||||||||    
T  11951837 taaaaacatctatgctttgcggtagatctctaccttgaccaatttta--tgatttacttatgatgtaactattgagataat 11951915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 225 - 504
Target Start/End: Original strand, 2743968 - 2744244
Alignment:
Q  225 agcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcat--ccattatgtccactttgttt 322  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||      |||| || |||  ||||||| |  |||||||||    
T  2743968 agcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 2744062  T
Q  323 gtcatgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatcttta 422  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||        ||| | || ||||||| |||||||||| |||||||| ||  ||||    
T  2744063 gtcatgctcccattgaattcttgtgactcaccatttctttggtttcattttttgaattcaaagattgcaaaagattaatctcatggagttttcaggttta 2744162  T
Q  423 ccaaagacatctatgctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
    ||||| |||| ||| || || |||||||||||   |||||||       ||||||| |||||| ||||||||||||||||||    
T  2744163 ccaaaaacatatattctttgtggtagatctctgtcttgaccatttttttgtgatttacttatgatgtaactattgagataat 2744244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 28173413 - 28173516
Alignment:
Q  260 tttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattgaattcttgtgactcaccatttc 359  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  28173413 tttaaaaattgtttggataaagaccggtgaaaacttcacttgtccattatgtccactttgtttgttatgaccccattgaattcttgtgactcaccatttc 28173512  T
Q  360 tttg 363  Q
    ||||    
T  28173513 tttg 28173516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 45682283 - 45682352
Alignment:
Q  27 caacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||| |||||||||||    
T  45682283 caacgaagagataatgtggtttatttacaaatagtgaaaagagataaatgatattagttgtgttgaaatg 45682352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 2743769 - 2743844
Alignment:
Q  21 tcgccgcaacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||| | || ||| |||||||||  |||||||||    
T  2743769 tcgccacaacgaagagaaattgtggtttatgtacaaatagtgaaaagagatcaatgatattagtcaagttgaaatg 2743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 11951464 - 11951531
Alignment:
Q  29 acgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    ||||||||| ||| |||||||||||||||||| ||||| | |||||| |||||| || ||||||||||    
T  11951464 acgaagagaaaatttggtttatgtacaaatagagaaaagagataaatgatattaatcatgttgaaatg 11951531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 464
Target Start/End: Original strand, 28173539 - 28173620
Alignment:
Q  384 agtttgcaaaggattaa-tctcttggagtttgcatctttaccaaagacatctatgctctgcggtagatctctagtttgacca 464  Q
    ||||||||||||||||| ||||||||||||| | | | ||  ||| ||| ||||||| |||||||||||||||  |||||||    
T  28173539 agtttgcaaaggattaaatctcttggagttttcttgtctaggaaaaacacctatgctatgcggtagatctctatcttgacca 28173620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 226 - 504
Target Start/End: Original strand, 18990 - 19263
Alignment:
Q  226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtc 325  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||  |||||||||||||||||||||||||    
T  18990 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 19089  T
Q  326 atgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatctttacca 425  Q
    |||||| ||||||||| |||||||||||||||||||||  ||||         || |||| ||||||| |||||||||| | |||||| ||| | |||||    
T  19090 atgctctcattgaattattgtgactcaccatttctttggtttcatttctt---ttcacagattgcaaatgattaatctcatagagttttcatgtctacca 19186  T
Q  426 aagacatctatgctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
    || ||||||||||  ||||||||| |||||  |||||||       ||||||| |||||| ||||||||||||||||||    
T  19187 aaaacatctatgccttgcggtagacctctatcttgacca--attttgtgatttacttatgatgtaactattgagataat 19263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 18778 - 18847
Alignment:
Q  27 caacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| | || |||||| ||||||||||    
T  18778 caacgaagagataatgtggtttatgtacaaatagtgaaaagagataattgatcttagtcatgttgaaatg 18847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 226 - 504
Target Start/End: Complemental strand, 411580 - 411307
Alignment:
Q  226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtc 325  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||  |||||||||||||||||||||||||    
T  411580 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 411481  T
Q  326 atgctcccattgaattcttgtgactcaccatttctttgtattcannnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatctttacca 425  Q
    |||||| ||||||||| |||||||||||||||||||||  ||||         || |||| ||||||| |||||||||| | |||||| ||| | |||||    
T  411480 atgctctcattgaattattgtgactcaccatttctttggtttcatttctt---ttcacagattgcaaatgattaatctcatagagttttcatgtctacca 411384  T
Q  426 aagacatctatgctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
    || ||||||||||  ||||||||| |||||  |||||||       ||||||| |||||| ||||||||||||||||||    
T  411383 aaaacatctatgccttgcggtagacctctatcttgacca--attttgtgatttacttatgatgtaactattgagataat 411307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 411792 - 411723
Alignment:
Q  27 caacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| | || |||||| ||||||||||    
T  411792 caacgaagagataatgtggtttatgtacaaatagtgaaaagagataattgatcttagtcatgttgaaatg 411723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 140 - 504
Target Start/End: Complemental strand, 29896893 - 29896538
Alignment:
Q  140 gaactttatgtatgactaagcattggtttatgctaaagatttttgttgaataatgttgacttggatattgcacgtacnnnnnnnnagcatgaatgagttt 239  Q
    ||||||||||||||||||| | |||||| ||||| | ||||||||| ||||||| ||||||||||||||||| | |         |||||||||||| ||    
T  29896893 gaactttatgtatgactaaccgttggttcatgcttaggatttttgtcgaataatattgacttggatattgcaaggatttctttttagcatgaatgagctt 29896794  T
Q  240 tcaaaggatgaaatttttagtttaaaaat--tgtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgtcatgctcccattg 337  Q
    | |||||||||| |||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  29896793 taaaaggatgaa-tttttagtttaaaaaaaatggttggataaagaccggtgaaaacatcactcatccattatgtccacttggtttgtcatgctcccattg 29896695  T
Q  338 aattcttgtgactcaccatttctttgtattcannnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatctttaccaaagacatctatg 437  Q
    ||||||||||| ||| |||||||||| |||          ||| |||||||||||||||  |||||||||||| || ||| || | |||| |||||||||    
T  29896694 aattcttgtgattcatcatttctttg-att------ttttattcacagtttgcaaaggacaaatctcttggagatt-catgttcatcaaaaacatctatg 29896603  T
Q  438 ctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
    || |||  ||||||||||  ||||||        ||||||| |||||| ||||||||||||||||||    
T  29896602 ctttgcattagatctctatcttgacc--gtttttgtgatttgcttatgatgtaactattgagataat 29896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 144 - 464
Target Start/End: Original strand, 45227650 - 45227974
Alignment:
Q  144 tttatgtatgactaagcattggtttatgctaaagatttttgttgaataatgttgacttggatattgcacgtacnnnnnnnnagcatgaatgagttttcaa 243  Q
    ||||||||||||||| | |||||| |||| ||  ||||||||  |||| | ||||||| | ||||||| |||         ||| |||||||| |||| |    
T  45227650 tttatgtatgactaaccgttggttcatgcgaagaatttttgtcaaatagtattgactttgctattgcaagtattattttttagcgtgaatgagctttcga 45227749  T
Q  244 aggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcatccattatgt-ccactttgtttgtcatgctcccattgaattc 342  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||  |||||| | ||||||| | |||||||||||||||||||||||||||||||    
T  45227750 aggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaattttcacttacccattattttccactttgtttgtcatgctcccattgaattc 45227849  T
Q  343 ttgtgactcaccatttctttgtattca---nnnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatctttaccaaagacatctatgct 439  Q
    |||||||||||||||||||||  || |           ||| |||| |||||||||||||||||| |||||||| ||  ||||||||| |||| ||||||    
T  45227850 ttgtgactcaccatttctttggttttatttttttttagattcacagattgcaaaggattaatctcatggagttttcaggtttaccaaaaacatatatgct 45227949  T
Q  440 ctgcggtagatctctagtttgacca 464  Q
     || ||||||| ||||  |||||||    
T  45227950 ttgtggtagatttctatcttgacca 45227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 45227492 - 45227561
Alignment:
Q  27 caacgaagagataatgtggtttatgtacaaatagtgaaaa-atataaattatattagtcgtgttgaaatg 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||    
T  45227492 caacgaagagataatgtggtttatgtacaaatagtgaaaagagataaatgatattagtcatgttgaaatg 45227561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 504
Target Start/End: Original strand, 29935083 - 29935360
Alignment:
Q  225 agcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaaacttcactcat--ccattatgtccactttgttt 322  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||      |||| || |||  ||||||| |  |||||||||    
T  29935083 agcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 29935177  T
Q  323 gtcatgctcccattgaattcttgtgactcaccatttctttgtattca-nnnnnnnnatttacagtttgcaaaggattaatctcttggagtttgcatcttt 421  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||         ||| | || ||||||| |||||||||| |||||||| ||  |||    
T  29935178 gtcatgctcccattgaattcttgtgacttaccatttctttggtttcatttttttaaattcaaagattgcaaaagattaatctcatggagttttcaggttt 29935277  T
Q  422 accaaagacatctatgctctgcggtagatctctagtttgaccannnnnnngtgattttcttatggtgtaactattgagataat 504  Q
    |||||| |||| ||| || || |||||||||||   |||||||       ||||||| |||||| ||||||||||||||||||    
T  29935278 accaaaaacatatattctttgtggtagatctctgtcttgaccatttttttgtgatttacttatgatgtaactattgagataat 29935360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 33296250 - 33296295
Alignment:
Q  21 tcgccgcaacgaagagataatgtggtttatgtacaaatagtgaaaa 66  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33296250 tcgccacaacgaagagataatgtggtttatgtacaaataatgaaaa 33296295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 29934884 - 29934929
Alignment:
Q  21 tcgccgcaacgaagagataatgtggtttatgtacaaatagtgaaaa 66  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||||    
T  29934884 tcgccacaacgaagagaaattgtggtttatgtacaaatagtgaaaa 29934929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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