View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7299_low_6 (Length: 487)
Name: NF7299_low_6
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 298358 - 297916
Alignment:
| Q |
17 |
acatcagtagtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaaccatcaataacagagtgtacaataataccggtactagaag |
116 |
Q |
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| T |
298358 |
acataagtagtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaactatcaataacagagtgtacaataagaccggtactagaag |
298259 |
T |
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| Q |
117 |
taaatcagattgnnnnnnntaaataaataaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaatattttg |
216 |
Q |
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| T |
298258 |
tga----gattgaaaaaaataaataaaaaaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaatattttg |
298163 |
T |
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| Q |
217 |
agaaaagttttgttatcactaaaaatattttttctattcaaatcccttaaaagacttgtattgattaaatgatcctcaagcaacttggcaagnnnnnnng |
316 |
Q |
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| T |
298162 |
agaaaagttttgttatcactaaaaatattttttctattcaaatcccttaaa-ga----tattgattaaatgatcctcaagcaactgggcaagaaaaaaag |
298068 |
T |
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| Q |
317 |
aattatacatatagaatatacagttaaatatgatagtcacccaccaccataatgaatgaaacaatgaattgatttttacttattattagtcctcatgcta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
298067 |
aattatacatatagaatatacagttaaatatgatagtcacccaccaccataatgaatgaaacaatgaattgatttttacttattattagtcctcatgata |
297968 |
T |
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| Q |
417 |
attatatatgctagtgcctgcgattgcgaaggttgttgttggcagtgacatg |
468 |
Q |
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| T |
297967 |
attatatatgctagtgcctgcgattgcgaaggttgttgttggcagtgacatg |
297916 |
T |
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