View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7299_low_7 (Length: 456)
Name: NF7299_low_7
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 33094004 - 33094453
Alignment:
| Q |
19 |
aattaagttctcacttcacatcatttcatcacaattctccca--------------caaaataatggccacgaaaccaataaactctcctaattaatgct |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33094004 |
aattaagttctcacttcacatcatttcatcacaattctcccacacgacacgacccacaaaataatggccacgaaaccaataaactctcctaattaatgct |
33094103 |
T |
|
| Q |
105 |
tttcccgttacttttgaaatttctttgcattaaatatctactagtactaattcattttatgatatcatatattcaaccccgacataaccctatagtaaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33094104 |
tttcccgttacttttgaaatttctttgcattaaatatctactagtactaattcattttatgatatcatatattcaaccccgacataaccctatagtaaat |
33094203 |
T |
|
| Q |
205 |
acactttattgatcaaattaacatctccatcatttggccaatgccacttgtaaccccctcataattcacacgtaatcccccttgccttatacacgcttgc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33094204 |
acactttattgatcaaattaacatctccatcatttggccaatgccacttgtaatcccctcatcattcacacgtaatcccccttgccttatacacgcttgc |
33094303 |
T |
|
| Q |
305 |
tagtacatacatcaataattcattcatcactatacaacggtaaccnnnnnnnngtttctctttatatctcactcacttctccgtcacttttccaaacctc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
33094304 |
tagtacatacatcaataattcattcatcactatacaacggtaaccaaaaaaaagtttctctttatatctcactctcttctccatcacttttccaaacctc |
33094403 |
T |
|
| Q |
405 |
actttacacaactctct------ttctcacttctcactctcattcatctc |
448 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33094404 |
actttacacaactctcttctcacttctcacttctcactctcattcatctc |
33094453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University