View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7299_low_8 (Length: 444)
Name: NF7299_low_8
Description: NF7299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7299_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 30138120 - 30138554
Alignment:
| Q |
1 |
ccaactaaccaaattaagccactgaagattgaaacaatccaaagggtgaaataattacgatcatcgggttctcgaagcatatggtaaatgaaagaagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30138120 |
ccaactaaccaaattaagccactgaagattgaaacaatccaaagggtgaaataattacgatcatcaggttctcgaagcatatggtaaatgaaagaagaga |
30138219 |
T |
|
| Q |
101 |
taatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgttgaaggaagaaatcatgagagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138220 |
taatggctgaacctaaacaaccaaaagaagtagcataaagagagaagaaacttgaaactttgtttgttttggatttgttgaaggaagaaatcatgagagc |
30138319 |
T |
|
| Q |
201 |
aagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggttgttttgaagaatcctgctgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138320 |
aagatggtgagtgtgagatgaacttgcaactgtgctagctaagactatgaaagcaatgtagggaatgaagattaaggttgttttgaagaatcctgctgga |
30138419 |
T |
|
| Q |
301 |
agacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatgaaagtgaggattggaatggcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138420 |
agacagaagaaaactccaatgcctgtggatgctgctgtgattagggtttggtattggctgttaaggtggaaagagatgaaagtgaggattggaatggcta |
30138519 |
T |
|
| Q |
401 |
aggttaaacctgaagcccatgcaattgatgtccat |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30138520 |
aggttaaacctgaagcccatgcaattgatgtccat |
30138554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University