View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7300_high_10 (Length: 319)

Name: NF7300_high_10
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7300_high_10
NF7300_high_10
[»] chr5 (2 HSPs)
chr5 (19-298)||(9102095-9102374)
chr5 (19-51)||(1554789-1554821)
[»] chr7 (2 HSPs)
chr7 (19-51)||(37587468-37587500)
chr7 (19-51)||(46135165-46135197)
[»] chr6 (2 HSPs)
chr6 (19-51)||(8001350-8001382)
chr6 (19-51)||(20473510-20473542)
[»] chr4 (1 HSPs)
chr4 (19-51)||(36280284-36280316)
[»] chr3 (2 HSPs)
chr3 (19-51)||(3861172-3861204)
chr3 (19-51)||(35188984-35189016)
[»] chr2 (4 HSPs)
chr2 (19-51)||(4640015-4640047)
chr2 (19-51)||(9484011-9484043)
chr2 (19-51)||(13467457-13467489)
chr2 (19-51)||(34099088-34099120)
[»] chr1 (2 HSPs)
chr1 (19-51)||(5242608-5242640)
chr1 (19-51)||(37306378-37306410)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 9102374 - 9102095
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctctagcagtaattttccatccttattccaggttgttttggcagaacactcaactagtgattctccatatct 118  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102374 tcaagacctcccgcttactaaacgggtgctctaacagtaattttccatccttattccaggttgttttggcagaacactcaactagtgattctccatatct 9102275  T
Q  119 tcagcacagaaatatcgataacaaattttgggcaagaaaatcaactaataaacacttaattaaaatacattctgtaattaaaatgcaaattagcgctgta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9102274 tcagcacagaaatatcgataacaaattttgggcaagaaaatcaactaataaacacttaagtaaaatacattctgtaattaaaatgcaaattagcgctgta 9102175  T
Q  219 atcaactaataaaccctagtttatcccgatttaagcatgtatttctgtgagaagtgcaataaacatgaggaaaagttttc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102174 atcaactaataaaccctagtttatcccgatttaagcatgtatttctgtgagaagtgcaataaacatgaggaaaagttttc 9102095  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 1554821 - 1554789
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  1554821 tcaagacctcccgcttactaaacgggtgctcta 1554789  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 37587468 - 37587500
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  37587468 tcaagacctcccgcttactaaacgggtgctcta 37587500  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 46135197 - 46135165
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  46135197 tcaagacctcccgcttactaaacgggtgctcta 46135165  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 8001382 - 8001350
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  8001382 tcaagacctcccgcttactaaacgggtgctcta 8001350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 20473510 - 20473542
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  20473510 tcaagacctcccgcttactaaacgggtgctcta 20473542  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 36280316 - 36280284
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  36280316 tcaagacctcccgcttactaaacgggtgctcta 36280284  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 3861172 - 3861204
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  3861172 tcaagacctcccgcttactaaacgggtgctcta 3861204  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 35189016 - 35188984
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  35189016 tcaagacctcccgcttactaaacgggtgctcta 35188984  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4640015 - 4640047
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  4640015 tcaagacctcccgcttactaaacgggtgctcta 4640047  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 9484011 - 9484043
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  9484011 tcaagacctcccgcttactaaacgggtgctcta 9484043  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 13467457 - 13467489
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  13467457 tcaagacctcccgcttactaaacgggtgctcta 13467489  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 34099120 - 34099088
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  34099120 tcaagacctcccgcttactaaacgggtgctcta 34099088  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 5242640 - 5242608
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  5242640 tcaagacctcccgcttactaaacgggtgctcta 5242608  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37306410 - 37306378
Alignment:
Q  19 tcaaggcctcccgcttactaaacgggtgctcta 51  Q
    ||||| |||||||||||||||||||||||||||    
T  37306410 tcaagacctcccgcttactaaacgggtgctcta 37306378  T

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