View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7300_high_4 (Length: 580)
Name: NF7300_high_4
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7300_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 33356553 - 33357114
Alignment:
| Q |
1 |
tactccctccaatattatccccattagtccctgacctcttaaattttttagatcaaagacttgctatagttttcccaatcattcaagccttcaaaaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33356553 |
tactccctccaatattatccccattagtccctgacctcttaaattttttagatcaaagacttgctatagttttcccaatcattcaagccttcaaaaacac |
33356652 |
T |
|
| Q |
101 |
aataacatatgacccattaggaataaccttaacatgggttggtccaaatatatgcaactacaaaggcttctactgcgacaacccgccggataatctctcg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33356653 |
aataacatctgacccattaggaataaccttaacatgggttggtccaaatatatgcaactacaaaggcttctactgcgacaacccgccggataatctctcg |
33356752 |
T |
|
| Q |
201 |
gccaccaccgtcgcctccatagatttcaacggcttccaactctccgccccttctcttgacgatttcatcgatcaactccccgacttagctcttttccatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33356753 |
gccaccaccgtcgcctccatagatttcaacggcttccaactctccgccccttctcttgacgatttcatcgatcaactccccgacttagctcttttccatg |
33356852 |
T |
|
| Q |
301 |
caaactccaacaatttctcaggttccatttcaccaaaaatagcatcactcaaatacctatacgaacttgatcttagtaacaatcttctctcaggaacatt |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33356853 |
caaactccaacaatttctcaggtaccatttcaccaaaaatagcatcactcaaatacctatacgaacttgatcttagtaacaatcttctctcaggaacatt |
33356952 |
T |
|
| Q |
401 |
tccatcttcgatcctaaacatgccgacactttcatttttagacattaggtacaacctcttcactggaacagtacctcaacaaatcttcatacaagaattg |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33356953 |
tccatcttcgatcctaaacatgccaacactttcatttttagacattaggtacaacctcttcactggaacagtacctcaacaaatcttcataaaagaattg |
33357052 |
T |
|
| Q |
501 |
agtgcaattttcctcaacaacaacaactttcttctaacacttcccaacaacataggcgaaac |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33357053 |
agtgcaattttcctcaacaacaacaactttcttctaacacttcccaacaacataggcgaaac |
33357114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University