View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7300_high_6 (Length: 470)
Name: NF7300_high_6
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7300_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 11887612 - 11887157
Alignment:
| Q |
1 |
tctcacgttgcacttgcgcattgttttacgctttctctaacgtccnnnnnnnn--ctccttccaaatccaatcgtttgctccctttgtttctttcaaagt |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887612 |
tctcacgttgcacttgcgcattgttttacgctttctctaacgtcctattttttttctccttccaaatccaatcgtttgctccctttgtttctttcaaagt |
11887513 |
T |
|
| Q |
99 |
attctgacttaactacactgagcactcacacactcgaaacttaaagtttaaggttaatattttctttctaattacaagtccactgacactataattgctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887512 |
attctgacttaactacactgagcactcacacactcgaaacttaaagtttaaggttaatattttctttctaattacaagtccactgacactataattgctt |
11887413 |
T |
|
| Q |
199 |
tcttaagtaccaactatgctactttctcttgttccattttgtctttcaatttattatatacatatttgtctaatgatttag---taattatatcatacat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11887412 |
tcttaagtaccaactatgctactttctcttgttccattttgtctttcaatttattatatacatatttgtctaatgatttagtactaattatatcatacat |
11887313 |
T |
|
| Q |
296 |
atttttgcaccacagattgtgaagcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887312 |
atttttgcaccacagattgtgaagcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaac |
11887213 |
T |
|
| Q |
396 |
tggagctgtctggttagaaactatcttgtgggacatggtctgtggggtgttgtgac |
451 |
Q |
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| T |
11887212 |
tggagctgtctggttagaaactatcttgtgggacatggtctgtggggtgttgtgac |
11887157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 337 - 450
Target Start/End: Complemental strand, 11816676 - 11816563
Alignment:
| Q |
337 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
436 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||||| |||| ||||||||||||| || |||| ||| |
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| T |
11816676 |
caagcattgcagcaagtggaatagttcttgaaccactaacaaaagacaactacgataattggagctgtttggtgagaaactatcttgcagggcatgatct |
11816577 |
T |
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| Q |
437 |
gtggggtgttgtga |
450 |
Q |
| |
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|||||| ||||||| |
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| T |
11816576 |
gtggggagttgtga |
11816563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 11776681 - 11776573
Alignment:
| Q |
340 |
gcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtg |
439 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| || | |||||||||||| |||||||||||| |||| | ||||||||||||||| |||| |||||| |
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| T |
11776681 |
gcattgcagctagtggaatagttcttgaaccactaacaagagacaactacgataactggagctgtttggtgaaaaactatcttgtggggcatgatctgtg |
11776582 |
T |
|
| Q |
440 |
gggtgttgt |
448 |
Q |
| |
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||| ||||| |
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|
| T |
11776581 |
gggcgttgt |
11776573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 452
Target Start/End: Complemental strand, 11841988 - 11841873
Alignment:
| Q |
337 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
436 |
Q |
| |
|
|||||||| |||| | || |||||||||||||||||| || |||||||||||||| |||||||||||| |||| ||||||||||||| ||| |||| ||| |
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| T |
11841988 |
caagcatttcagcaaatgcaatagttcttgaaccactaacaaaagacaactacgataactggagctgtttggtgagaaactatcttgaggggcatgatct |
11841889 |
T |
|
| Q |
437 |
gtggggtgttgtgact |
452 |
Q |
| |
|
|||||| ||||||||| |
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| T |
11841888 |
gtggggagttgtgact |
11841873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 11739970 - 11740035
Alignment:
| Q |
356 |
aatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatct |
421 |
Q |
| |
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||||||| ||||||||||||| ||||||||||| || |||||||||||||||| ||||| ||||| |
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| T |
11739970 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatct |
11740035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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