View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7300_low_1 (Length: 1384)
Name: NF7300_low_1
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7300_low_1 |
 | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
| [»] scaffold0074 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 1217; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1217; E-Value: 0
Query Start/End: Original strand, 39 - 1363
Target Start/End: Complemental strand, 9103416 - 9102095
Alignment:
| Q |
39 |
taattcgtttaaattaatatagatgtcagtgtttcagtatcgtgtccggtgtatgtgtctctgtcgttgcctcattgacagaggatttcgaaagacaaaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
9103416 |
taattcgtttaaattaatatagatgtcagtgtttcagtatcgtgtccggtgtatgtctctctgtcgttgcctcattgacagagggtttccaaaggcaaaa |
9103317 |
T |
|
| Q |
139 |
taaataaattgtcctcctaagcttgttctgaaacgggagagaaaataaggtcattgttatgtggatttctttctatcctgaaggtttgttccccccagct |
238 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9103316 |
taaataaattgtcctcctatgcttgttctgaaacgggagagaaaataaggtcattgttatgtggatttctttctatcctgaaggtttgttccccccaact |
9103217 |
T |
|
| Q |
239 |
ttcgtccctagcacttaaagtgagctatattggtcccacagcaatggctattaaaaatgagttcattgtgcttcatgcaaagaaaatgcacaaagctcca |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9103216 |
ttcgtccctagcacttaaagtgagctatattggtcccacagcaatggctattaaaaatgagttcattgtgcttcatgcaaagaaaatgcacgaagctcca |
9103117 |
T |
|
| Q |
339 |
atgctgcaagcgcgtgtgcatgaatctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacat |
438 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
9103116 |
atgctgcaagcgcatgtgcacgaatctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcctatttttcagaaatctgttcatacat |
9103017 |
T |
|
| Q |
439 |
cacatattctggagacatattttagccactctattaaaaaa-caatattaatttaactgaaatgtaccttaattgagaagaactcaaaaaatataacaaa |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9103016 |
cacatattctggagacatattttagccactctattaaaaaaacaatattaatttaactgaaatgtaccttaattgagaagaactcaaaaaatataacaaa |
9102917 |
T |
|
| Q |
538 |
agagtgaacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaatt |
637 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9102916 |
agagtgaacattcaaaacttactatgctccaacaattctatttgtacttccttcgtcttgatttgctttgtcaatttgagccaaaccaaaatctaaaatt |
9102817 |
T |
|
| Q |
638 |
ttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataacttagacgagatagttcatgcaaataaattctccgagcaatt |
737 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9102816 |
ttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataacttagacgagatagttcatgcaaataaattctctgagcaatt |
9102717 |
T |
|
| Q |
738 |
cctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaa |
837 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9102716 |
cctcctagcatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtctggatatagaaaa |
9102617 |
T |
|
| Q |
838 |
agctatatatataatgcacgaatcttaaggccatcttcataagaaagtgtcttgtgcgagggtgtgtgtttgtgtagactcttacaagtcgagtctacgg |
937 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9102616 |
agctatatatataatgcacgaatcttaa----atcttcataagaaagtgtcttgtgcgagggtgtgtgtttgtgtagactcttacaagtcgagtctacgg |
9102521 |
T |
|
| Q |
938 |
atttccctcaagtctatgtagactctcaagtatgacaaccttggttgtatatgttacgttgccttggagatttggtgcaaagagggtaattttccatcct |
1037 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9102520 |
atttccctcaagtctatgtagactctcgagtatgacaaccttggttgtatatgttacgttgccttggagatttggtgcaaagagggtaattttccatcct |
9102421 |
T |
|
| Q |
1038 |
ttttattttgaaagaaaaagaattttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctctagcagtaattttccatccttat |
1137 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9102420 |
ttttattttgaaagaaaaagaattttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaacagtaattttccatccttat |
9102321 |
T |
|
| Q |
1138 |
tccaggttgttttggcagaacactcaactagtgattctccatatcttcagcacagaaatatcgataacaaattttgggcaagaaaatcaactaataaaca |
1237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9102320 |
tccaggttgttttggcagaacactcaactagtgattctccatatcttcagcacagaaatatcgataacaaattttgggcaagaaaatcaactaataaaca |
9102221 |
T |
|
| Q |
1238 |
cttaattaaaatacattctgtaattaaaatgcaaattagcgctgtaatcaactaataaaccctagtttatcccgatttaagcatgtatttctgtgagaag |
1337 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9102220 |
cttaagtaaaatacattctgtaattaaaatgcaaattagcgctgtaatcaactaataaaccctagtttatcccgatttaagcatgtatttctgtgagaag |
9102121 |
T |
|
| Q |
1338 |
tgcaataaacatgaggaaaagttttc |
1363 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9102120 |
tgcaataaacatgaggaaaagttttc |
9102095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 1058 - 1116
Target Start/End: Complemental strand, 1554847 - 1554789
Alignment:
| Q |
1058 |
aattttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1554847 |
aattttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1554789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 552 - 591
Target Start/End: Original strand, 27368597 - 27368636
Alignment:
| Q |
552 |
aaacttactatgttccaacaattctatttgtacttccttc |
591 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
27368597 |
aaacttactaggttccaacgattctatttgtacttccttc |
27368636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 1e-78; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 540 - 865
Target Start/End: Original strand, 21968182 - 21968511
Alignment:
| Q |
540 |
agtgaacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaatttt |
639 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || | | || | | ||||||||||||| ||||||| |
|
|
| T |
21968182 |
agtgaacatttgaaacttactatgttccaacaattctatttgtacttccttcctcttgacttatttcgaccatccgtgccaaaccaaaatctgaaatttt |
21968281 |
T |
|
| Q |
640 |
aggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataacttaga--cgagatagttcatgcaaataaa---ttctccgagca |
734 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||||||| ||| |||||| |
|
|
| T |
21968282 |
aggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaataaagaattcctcgagca |
21968381 |
T |
|
| Q |
735 |
attcctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatataga |
834 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||| |||| | | ||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
21968382 |
attcctccaatgatgttaaagcgttcaacccaagttaacaacttttgctgatgagaatctacaaaattgttcataaaataaaatcaagtccatatataga |
21968481 |
T |
|
| Q |
835 |
aaaagctatatatataatgcacgaatcttaa |
865 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||| |
|
|
| T |
21968482 |
aaaa-ctatatatgtaatgtatgaatcttaa |
21968511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 530 - 865
Target Start/End: Original strand, 22086056 - 22086396
Alignment:
| Q |
530 |
ataacaaaagagtgaacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaat |
629 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||| | | ||||||||||| |
|
|
| T |
22086056 |
ataacaaagtagtaaacatttaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttatttcgaccattcgtgccaaaccaaaat |
22086155 |
T |
|
| Q |
630 |
ctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataacttaga--cgagatagttcatgcaaataaa---t |
724 |
Q |
| |
|
|| ||||| ||||| ||||||||||| ||||| |||||||||| ||||||||||| | ||||||||||| || ||||| ||||||||||||||| | |
|
|
| T |
22086156 |
ctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaataaagaat |
22086255 |
T |
|
| Q |
725 |
tctccgagcaattcctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtc |
824 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||| ||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
22086256 |
tcctccagcaattcctcctatgatgttaaagcgttcaacccaagttaacaacttttgctgttgagaatctacaaaattgtttatgaaataaaatcaactt |
22086355 |
T |
|
| Q |
825 |
cggatatagaaaaagctatatatataatgcacgaatcttaa |
865 |
Q |
| |
|
| ||||| |||||||||||| | |||||| ||||||||| |
|
|
| T |
22086356 |
catatataaaaaaagctatatgtggaatgcatgaatcttaa |
22086396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 4e-60
Query Start/End: Original strand, 544 - 838
Target Start/End: Complemental strand, 22206992 - 22206693
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| || ||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
22206992 |
aacattcaaaacttacaatgttccaactattctatttgtacttccctcgtcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttagga |
22206893 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||| | ||||||||||| || ||||| |||||||||||| ||| | | | |||| | |
|
|
| T |
22206892 |
atcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaattttcatgcaaataaagaatccctcaaacaatac |
22206793 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaaa |
838 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
22206792 |
ctcctatgatgttgaagcgttcaacccaagttaacaacttttgccgttgagaatctacaaaatagttcacgaaataaaattaagtccatatatagaaaaa |
22206693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 544 - 838
Target Start/End: Original strand, 20236013 - 20236312
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| || ||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
20236013 |
aacattcaaaacttacaatgttccaacaattctatttgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttagga |
20236112 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||| | ||||||||||| || || || | ||||||||||| ||| | || |||||| |
|
|
| T |
20236113 |
atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcggacaattc |
20236212 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaaa |
838 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
20236213 |
ctcctatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcacgaaataaaattaagtccatatacagaaaaa |
20236312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 544 - 838
Target Start/End: Original strand, 22129997 - 22130296
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| || ||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
22129997 |
aacattcaaaacttacaatgttccaacaattctatttgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatcagaaattttagga |
22130096 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||| | ||||||||||| || || || | ||||||||||| ||| | || |||||| |
|
|
| T |
22130097 |
atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcggacaattc |
22130196 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaaa |
838 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
22130197 |
ctcctatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcacgaaataaaattaagtccatatacagaaaaa |
22130296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 544 - 838
Target Start/End: Original strand, 18995691 - 18995990
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |||| || |||||||| || ||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
18995691 |
aacattcaaaacttacaatgttccagcaattctatttgtatttccctcatcttgactaatttcaacaattcgagccaaaccaaaatctgaaattttagga |
18995790 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaataaattctcc---gagcaattc |
738 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||||| | ||||||||||| || ||||| ||||||||||||||| ||| || |||||| |
|
|
| T |
18995791 |
atcatattttcgtataatagaatattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaagaatccctcgaacaattc |
18995890 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaaa |
838 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
18995891 |
ctcctatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcacgaaataaaattaagacaatatatagaaaaa |
18995990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 544 - 801
Target Start/End: Original strand, 18979616 - 18979878
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||| || ||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
18979616 |
aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagga |
18979715 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||| ||| | ||||||||||| || ||||| ||||||||||||| || || ||| |||||| |
|
|
| T |
18979716 |
atcatattttcgtctaatagaatattgctaggtttgacatcccgatgtataactttgagtcgagaatgttcatgcaaataaagaagtccacgaacaattc |
18979815 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaat |
801 |
Q |
| |
|
|||||| || || ||||||||| ||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
18979816 |
ctcctatgatattgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaat |
18979878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 544 - 808
Target Start/End: Original strand, 20083912 - 20084181
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||| || ||||| ||| ||||||||||||| ||||||||| | |
|
|
| T |
20083912 |
aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatcttgacttatttcaacaattcgagccaaaccaaaatctgaaattttagta |
20084011 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||| | |||||||||| || || || ||||||||||||| || || ||| |||||| |
|
|
| T |
20084012 |
atcatattttcgtctaatagaatattgctaggtttgagatcccggtgtataactttcagtcgggaatgttcatgcaaataaagaagtcctcgaacaattc |
20084111 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcat |
808 |
Q |
| |
|
|||||| || || ||||||||| ||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
20084112 |
ctcctatgatattgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcat |
20084181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 85; E-Value: 8e-40
Query Start/End: Original strand, 544 - 808
Target Start/End: Original strand, 18990968 - 18991237
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||| || |||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
18990968 |
aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatcttgacttatttcaataattcgagccaaaccaaaatctgaaattttagga |
18991067 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||| | ||||||||||| || ||||| ||||||||||||| || || ||| |||||| |
|
|
| T |
18991068 |
atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatgttcatgcaaataaagaagtcctcgaacaattc |
18991167 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcat |
808 |
Q |
| |
|
| |||| || | ||||||||| ||||||||||||| |||| ||||| |||||||||||| |||||| |
|
|
| T |
18991168 |
cacctatgatactgaagcgttcaacccaagttaacaacttttgttgttgaaaatctacaaaatagttcat |
18991237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 544 - 808
Target Start/End: Complemental strand, 24387097 - 24386828
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| || | |||| || || ||||| ||| |||| |||||| | ||||||||| | |
|
|
| T |
24387097 |
aacattcaaaacttacaatgttccaacaattctatctgtacttccctcatattgaattatttcaacaattcgagccaaaacaaaatatgaaattttagaa |
24386998 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaataaat---tctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||| | ||||||||||| || ||||| ||||||||||||||| || |||||||||| |
|
|
| T |
24386997 |
atcatattttcgtctaatagaatattgctaggtttgagattccgatgtataactttaagtcgagaatgttcatgcaaataaagaagtcctcgagcaattc |
24386898 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcat |
808 |
Q |
| |
|
|||||| || || ||||||||| ||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
24386897 |
ctcctatgatattgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcat |
24386828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1062 - 1116
Target Start/End: Complemental strand, 8001404 - 8001350
Alignment:
| Q |
1062 |
ttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8001404 |
ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
8001350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1063 - 1116
Target Start/End: Original strand, 20473489 - 20473542
Alignment:
| Q |
1063 |
tgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20473489 |
tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
20473542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 18990777 - 18990872
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| | |||||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
18990777 |
tcttttcagcaataatctctaaaagcataactccaaaactataaatgtcggaattttcagaaaattgtccaaacattacatattccggagacatat |
18990872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 18979425 - 18979520
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||| | |||| ||||| |||||||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
18979425 |
tctttccagcaataatctctacaagcataactccaaaactatatatgtcggatttttcagaaaattgtccaaacattacatattccggagacatat |
18979520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 18995489 - 18995584
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| ||| ||| ||| ||||||| |||||||||| |
|
|
| T |
18995489 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatat |
18995584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 20083721 - 20083816
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||| | |||||||||| |||||||||||| ||| | ||||| |||||||| |||||||||| |
|
|
| T |
20083721 |
tctttccagcaataatctctataagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaacattacatattccggagacatat |
20083816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 22207174 - 22207079
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| || ||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| ||| ||| ||| |||||||||||||||||| |
|
|
| T |
22207174 |
tctttccaacaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattctggagacatat |
22207079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 20235825 - 20235920
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| ||| | | ||| ||||||| |||||||||| |
|
|
| T |
20235825 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatat |
20235920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 22129809 - 22129904
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| ||| | | ||| ||||||| |||||||||| |
|
|
| T |
22129809 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatat |
22129904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 363 - 458
Target Start/End: Original strand, 22001825 - 22001920
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||| |||||||||| ||||| ||||||| | ||||||| || |||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
22001825 |
tctttccagctacaatctctatgatcatgactccaaaactataaatatctgatttttcagaaaattgtctaaacattgcatattctggagacatat |
22001920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 24387281 - 24387200
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacata |
444 |
Q |
| |
|
||||| |||||| |||||| |||| || |||||||| | |||||||||| |||||||||||| ||| ||||||| ||||| |
|
|
| T |
24387281 |
tctttccagcaataatctcgaaaagcagaactccaaaactataaatgtcggatttttcagaaaattgtccaaacattacata |
24387200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 97; Significance: 5e-47; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 544 - 855
Target Start/End: Complemental strand, 7313 - 6996
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||| || |||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
7313 |
aacattcaaaacttactatgttccagcaattctatttgtatttccctcatcttgacttatttcaacaatccgagccaaaccaaaatctgaaattttagga |
7214 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaata---aattctccgagcaattc |
738 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||| | ||||||||||| || || || | ||||||||||| ||| | ||| |||||| |
|
|
| T |
7213 |
atcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgtgaatgatcatgcaaataaagaatccctcgaacaattc |
7114 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaaa |
838 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
7113 |
ctcctatgatgttgaagcgttcaccccaagttaacaacttttgtttttgagaatctacaaaatagttcaggaaataaaattaagccaatatatagaaaaa |
7014 |
T |
|
| Q |
839 |
gc-tatatatataatgca |
855 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
7013 |
acttatatatgtaatgca |
6996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 7504 - 7409
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| ||| ||| ||| ||||||| |||||||||| |
|
|
| T |
7504 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcagatttttcagaaaattgtccaagcattgcatattccggagacatat |
7409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 87; Significance: 5e-41; HSPs: 2)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 87; E-Value: 5e-41
Query Start/End: Original strand, 544 - 838
Target Start/End: Complemental strand, 49768 - 49469
Alignment:
| Q |
544 |
aacattcaaaacttactatgttccaacaattctatttgtacttccttcgtcttgacttgctttgtcaatttgagtcaaaccaaaatctaaaattttagga |
643 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |||| || |||||||| || ||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
49768 |
aacattcaaaacttacaatgttccagcaattctatttgtatttccctcatcttgactaatttcaacaattcgagccaaaccaaaatctgaaattttagga |
49669 |
T |
|
| Q |
644 |
gtcatattttcagctaatggaatattactaggtttgagatcgctatgtataacttaga--cgagatagttcatgcaaataaattctccg---agcaattc |
738 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||| | ||||||||||| || ||||| |||||||||||||| ||| | |||||| |
|
|
| T |
49668 |
atcatattttcgttcaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaatattcatgcaaataaagaatccctctaacaattc |
49569 |
T |
|
| Q |
739 |
ctcctagtatgttaaagcgttcagcccaagttaacaatttttaccgttgagaatctacaaaattgttcatgaaataaaatcaagtccggatatagaaaaa |
838 |
Q |
| |
|
|| ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
49568 |
ctactatgatgttgaagcgttcaacccaagttaacaacttttgttgttgagaatctacaaaatagttcacgaaattaaattaagtccatatatagaaaaa |
49469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 49970 - 49875
Alignment:
| Q |
363 |
tctttgcagcaacaatctctaaaatcataactccaagaatataaatgtcccatttttcagaaatctgttcaaacatcacatattctggagacatat |
458 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||| ||| ||| ||| ||||||| |||||||||| |
|
|
| T |
49970 |
tctttccagcaataatctctaaaagcataactccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatat |
49875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 6e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 1058 - 1116
Target Start/End: Complemental strand, 36280342 - 36280284
Alignment:
| Q |
1058 |
aattttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36280342 |
aattttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
36280284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1061 - 1116
Target Start/End: Complemental strand, 50091359 - 50091304
Alignment:
| Q |
1061 |
tttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50091359 |
tttgctctcgttgagagttgaactcaagacctcccgcttactaaacaggtgctcta |
50091304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1064 - 1116
Target Start/End: Original strand, 11942579 - 11942631
Alignment:
| Q |
1064 |
gctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
11942579 |
gctctcgttgagagtcgaactcaagacgtcccgcttactaaacgggtgatcta |
11942631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1062 - 1116
Target Start/End: Complemental strand, 10065355 - 10065307
Alignment:
| Q |
1062 |
ttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10065355 |
ttgctctcattgagagttga------gacctcccgcttactaaacgggtgctcta |
10065307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 9e-21; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 1060 - 1116
Target Start/End: Original strand, 4639991 - 4640047
Alignment:
| Q |
1060 |
ttttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4639991 |
ttttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
4640047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1061 - 1116
Target Start/End: Complemental strand, 34099143 - 34099088
Alignment:
| Q |
1061 |
tttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34099143 |
tttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
34099088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1062 - 1116
Target Start/End: Original strand, 9483989 - 9484043
Alignment:
| Q |
1062 |
ttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9483989 |
ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
9484043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1063 - 1116
Target Start/End: Original strand, 13467436 - 13467489
Alignment:
| Q |
1063 |
tgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13467436 |
tgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
13467489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1063 - 1116
Target Start/End: Original strand, 13464697 - 13464750
Alignment:
| Q |
1063 |
tgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||||| || | ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13464697 |
tgctctcgttaaaagttgaattcaagacctcccgcttactaaacaagtgctcta |
13464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1061 - 1116
Target Start/End: Original strand, 37587445 - 37587500
Alignment:
| Q |
1061 |
tttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37587445 |
tttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
37587500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1062 - 1116
Target Start/End: Complemental strand, 46135219 - 46135165
Alignment:
| Q |
1062 |
ttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46135219 |
ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
46135165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1061 - 1116
Target Start/End: Original strand, 3861149 - 3861204
Alignment:
| Q |
1061 |
tttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3861149 |
tttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
3861204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1062 - 1116
Target Start/End: Complemental strand, 35189038 - 35188984
Alignment:
| Q |
1062 |
ttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35189038 |
ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
35188984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1073 - 1116
Target Start/End: Original strand, 49019534 - 49019577
Alignment:
| Q |
1073 |
gagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49019534 |
gagagttgaactcaagacctcccgcttactaaacaggtgctcta |
49019577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 4e-20; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1061 - 1116
Target Start/End: Complemental strand, 5242663 - 5242608
Alignment:
| Q |
1061 |
tttgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5242663 |
tttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
5242608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1063 - 1116
Target Start/End: Complemental strand, 37306431 - 37306378
Alignment:
| Q |
1063 |
tgctctcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
1116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37306431 |
tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctcta |
37306378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 623 - 723
Target Start/End: Complemental strand, 47593135 - 47593033
Alignment:
| Q |
623 |
ccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt--agacgagatagttcatgcaaat |
720 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| | | | ||| |||||||||||||||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
47593135 |
ccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatattcatgcaaat |
47593036 |
T |
|
| Q |
721 |
aaa |
723 |
Q |
| |
|
||| |
|
|
| T |
47593035 |
aaa |
47593033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 623 - 698
Target Start/End: Complemental strand, 47607400 - 47607325
Alignment:
| Q |
623 |
ccaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgagatcgctatgtataactt |
698 |
Q |
| |
|
||||||||| | ||||||||| |||||| |||| ||||| ||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
47607400 |
ccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataactt |
47607325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 554 - 589
Target Start/End: Complemental strand, 47698525 - 47698490
Alignment:
| Q |
554 |
acttactatgttccaacaattctatttgtacttcct |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47698525 |
acttactatgttccaacaattctatttgtacttcct |
47698490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 622 - 681
Target Start/End: Original strand, 10401677 - 10401736
Alignment:
| Q |
622 |
accaaaatctaaaattttaggagtcatattttcagctaatggaatattactaggtttgag |
681 |
Q |
| |
|
|||||||||| | ||||| ||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10401677 |
accaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgag |
10401736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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