View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7300_low_2 (Length: 904)

Name: NF7300_low_2
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7300_low_2
NF7300_low_2
[»] chr6 (25 HSPs)
chr6 (18-513)||(33615180-33615675)
chr6 (627-889)||(33615786-33616046)
chr6 (342-474)||(27822118-27822251)
chr6 (362-474)||(1127211-1127323)
chr6 (357-513)||(11658853-11659005)
chr6 (342-431)||(3536034-3536123)
chr6 (384-513)||(24443113-24443238)
chr6 (342-431)||(3542245-3542334)
chr6 (352-474)||(12882079-12882202)
chr6 (350-431)||(29340814-29340895)
chr6 (354-469)||(8048978-8049092)
chr6 (342-427)||(30049920-30050005)
chr6 (369-427)||(30052207-30052264)
chr6 (352-424)||(18727115-18727186)
chr6 (345-511)||(18727846-18728011)
chr6 (360-431)||(14238436-14238507)
chr6 (343-424)||(18718201-18718279)
chr6 (354-423)||(22889268-22889337)
chr6 (354-423)||(22910810-22910879)
chr6 (399-511)||(32361292-32361401)
chr6 (341-391)||(29342063-29342114)
chr6 (435-474)||(34373879-34373918)
chr6 (358-474)||(22873769-22873887)
chr6 (397-474)||(24664221-24664298)
chr6 (364-425)||(33215185-33215246)
[»] chr8 (34 HSPs)
chr8 (341-470)||(24731188-24731317)
chr8 (342-506)||(24730961-24731121)
chr8 (352-474)||(2687699-2687821)
chr8 (342-474)||(2189722-2189853)
chr8 (342-431)||(42891664-42891753)
chr8 (354-429)||(42890394-42890468)
chr8 (353-474)||(20693756-20693877)
chr8 (355-509)||(26374824-26374975)
chr8 (365-474)||(16598205-16598315)
chr8 (352-474)||(14130122-14130244)
chr8 (342-431)||(22921850-22921939)
chr8 (394-474)||(2609547-2609627)
chr8 (349-431)||(23570584-23570666)
chr8 (342-431)||(6845336-6845425)
chr8 (342-431)||(22512046-22512135)
chr8 (342-431)||(22519346-22519435)
chr8 (350-431)||(22926656-22926737)
chr8 (365-454)||(18468626-18468714)
chr8 (395-474)||(24577581-24577660)
chr8 (369-476)||(24578804-24578911)
chr8 (341-431)||(37189866-37189956)
chr8 (342-431)||(22520799-22520888)
chr8 (414-510)||(16598091-16598183)
chr8 (356-513)||(2188355-2188512)
chr8 (394-474)||(2689104-2689183)
chr8 (380-431)||(23573583-23573633)
chr8 (412-476)||(10629188-10629252)
chr8 (342-382)||(18180713-18180753)
chr8 (341-401)||(26378031-26378090)
chr8 (371-414)||(30440743-30440786)
chr8 (365-474)||(25479427-25479537)
chr8 (412-474)||(28263836-28263898)
chr8 (440-474)||(30440694-30440728)
chr8 (433-474)||(26377988-26378029)
[»] chr2 (30 HSPs)
chr2 (354-509)||(23457570-23457723)
chr2 (350-474)||(33051575-33051699)
chr2 (350-473)||(15129347-15129470)
chr2 (342-513)||(36647212-36647381)
chr2 (353-476)||(5171596-5171719)
chr2 (352-474)||(8294537-8294657)
chr2 (341-431)||(27952317-27952407)
chr2 (358-474)||(28737794-28737910)
chr2 (342-431)||(33655628-33655716)
chr2 (353-513)||(21772296-21772452)
chr2 (342-431)||(22011436-22011525)
chr2 (342-428)||(2155970-2156056)
chr2 (352-474)||(12966433-12966555)
chr2 (342-431)||(27956154-27956243)
chr2 (342-431)||(31636337-31636426)
chr2 (361-474)||(32161988-32162102)
chr2 (350-474)||(4184885-4185010)
chr2 (354-474)||(32163783-32163904)
chr2 (342-513)||(1518112-1518281)
chr2 (342-428)||(31634107-31634193)
chr2 (356-513)||(36615128-36615285)
chr2 (360-474)||(18945917-18946031)
chr2 (352-426)||(28737911-28737984)
chr2 (397-508)||(36648890-36649001)
chr2 (376-474)||(1218321-1218419)
chr2 (396-473)||(12123950-12124027)
chr2 (369-474)||(33053374-33053479)
chr2 (376-473)||(23456533-23456630)
chr2 (352-474)||(19582067-19582191)
chr2 (376-426)||(2165899-2165948)
[»] chr7 (31 HSPs)
chr7 (340-474)||(4888684-4888818)
chr7 (352-513)||(1786605-1786763)
chr7 (354-474)||(5934561-5934681)
chr7 (352-511)||(1369729-1369884)
chr7 (352-474)||(11000836-11000958)
chr7 (376-474)||(24840100-24840198)
chr7 (366-474)||(11228938-11229046)
chr7 (337-431)||(859151-859245)
chr7 (337-431)||(1217155-1217249)
chr7 (352-513)||(6451760-6451917)
chr7 (342-431)||(13882686-13882775)
chr7 (376-474)||(27142623-27142721)
chr7 (350-474)||(1365628-1365752)
chr7 (342-428)||(13886159-13886245)
chr7 (354-474)||(8916389-8916509)
chr7 (376-513)||(11228642-11228776)
chr7 (354-474)||(30217770-30217890)
chr7 (340-459)||(7803029-7803148)
chr7 (365-476)||(27309638-27309749)
chr7 (350-474)||(1874497-1874619)
chr7 (350-475)||(1883449-1883570)
chr7 (393-510)||(3778759-3778880)
chr7 (400-474)||(35814828-35814902)
chr7 (342-513)||(2767850-2768015)
chr7 (407-513)||(1690196-1690298)
chr7 (400-472)||(18790231-18790302)
chr7 (352-427)||(4133284-4133359)
chr7 (365-431)||(1220464-1220529)
chr7 (376-438)||(1753632-1753694)
chr7 (354-431)||(13466731-13466808)
chr7 (399-428)||(13886245-13886274)
[»] chr4 (23 HSPs)
chr4 (342-511)||(40206072-40206237)
chr4 (350-474)||(21433571-21433695)
chr4 (352-510)||(13991389-13991543)
chr4 (358-473)||(22486792-22486905)
chr4 (376-474)||(10494860-10494958)
chr4 (342-431)||(6659331-6659419)
chr4 (354-474)||(7634037-7634157)
chr4 (370-474)||(18689549-18689653)
chr4 (394-470)||(9260534-9260610)
chr4 (354-474)||(18657054-18657174)
chr4 (376-470)||(38888024-38888118)
chr4 (341-469)||(19935448-19935576)
chr4 (365-467)||(53477235-53477339)
chr4 (343-431)||(7723665-7723751)
chr4 (342-431)||(24667657-24667745)
chr4 (394-474)||(13990729-13990809)
chr4 (352-427)||(17254893-17254968)
chr4 (359-431)||(54700614-54700686)
chr4 (376-474)||(3765241-3765339)
chr4 (358-461)||(7724093-7724193)
chr4 (352-425)||(50515905-50515978)
chr4 (366-474)||(15848362-15848469)
chr4 (376-407)||(22486745-22486776)
[»] chr1 (23 HSPs)
chr1 (361-509)||(10927120-10927262)
chr1 (341-513)||(31915471-31915639)
chr1 (341-474)||(12944073-12944206)
chr1 (342-513)||(23987492-23987665)
chr1 (352-474)||(28660756-28660879)
chr1 (352-474)||(50713670-50713792)
chr1 (352-474)||(9030973-9031096)
chr1 (353-474)||(10928246-10928367)
chr1 (354-474)||(8967815-8967936)
chr1 (341-431)||(8931220-8931310)
chr1 (352-471)||(28661078-28661196)
chr1 (341-431)||(50857443-50857533)
chr1 (352-513)||(10925662-10925816)
chr1 (350-474)||(40058110-40058236)
chr1 (358-513)||(43681379-43681535)
chr1 (341-474)||(239644-239776)
chr1 (376-428)||(13444023-13444074)
chr1 (352-513)||(21903674-21903830)
chr1 (352-470)||(8221449-8221567)
chr1 (394-509)||(9194994-9195105)
chr1 (354-428)||(31913380-31913453)
chr1 (379-513)||(33152756-33152889)
chr1 (354-474)||(28659577-28659699)
[»] chr5 (9 HSPs)
chr5 (352-511)||(18252340-18252495)
chr5 (352-474)||(26140300-26140422)
chr5 (343-431)||(21848966-21849054)
chr5 (352-474)||(22440814-22440936)
chr5 (360-474)||(492523-492638)
chr5 (365-474)||(19497327-19497437)
chr5 (341-431)||(40778785-40778875)
chr5 (352-428)||(8456389-8456465)
chr5 (394-431)||(9868457-9868494)
[»] chr3 (15 HSPs)
chr3 (341-474)||(2472688-2472821)
chr3 (341-513)||(365592-365760)
chr3 (341-431)||(43303959-43304049)
chr3 (342-431)||(43306672-43306761)
chr3 (350-513)||(8536377-8536540)
chr3 (352-436)||(52708839-52708923)
chr3 (342-431)||(5128909-5128998)
chr3 (376-512)||(1320090-1320215)
chr3 (342-431)||(3063737-3063826)
chr3 (342-431)||(3068875-3068964)
chr3 (353-474)||(2107866-2107985)
chr3 (355-467)||(41152514-41152626)
chr3 (365-454)||(45168343-45168434)
chr3 (352-431)||(33175835-33175914)
chr3 (352-429)||(35908496-35908572)
[»] scaffold0251 (1 HSPs)
scaffold0251 (341-474)||(9659-9793)
[»] scaffold0024 (2 HSPs)
scaffold0024 (352-474)||(145690-145813)
scaffold0024 (352-513)||(143930-144084)
[»] scaffold0054 (3 HSPs)
scaffold0054 (354-513)||(49244-49398)
scaffold0054 (355-470)||(37673-37786)
scaffold0054 (354-423)||(10663-10732)
[»] scaffold0240 (3 HSPs)
scaffold0240 (358-474)||(16004-16119)
scaffold0240 (363-474)||(1614-1725)
scaffold0240 (354-457)||(14821-14923)
[»] scaffold0110 (2 HSPs)
scaffold0110 (342-415)||(46733-46806)
scaffold0110 (350-431)||(45270-45351)
[»] scaffold0090 (1 HSPs)
scaffold0090 (405-474)||(15127-15196)
[»] scaffold0531 (1 HSPs)
scaffold0531 (354-426)||(11601-11672)
[»] scaffold0330 (1 HSPs)
scaffold0330 (363-474)||(17596-17707)
[»] scaffold0184 (1 HSPs)
scaffold0184 (392-455)||(14175-14238)
[»] scaffold0078 (1 HSPs)
scaffold0078 (392-455)||(58606-58669)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 33615180 - 33615675
Alignment:
Q  18 caaacaacaccgcaaccctttttattttctttgaccaatgtctttttccttttataataattgcttattgcttccaaaggaaacatttgacttcaactta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33615180 caaacaacaccgcaaccctttttattttctttgaccaatgtctttttccttttataataattgcttattgcttccaaaggaaacatttgacttaaactta 33615279  T
Q  118 atcaacatttcttgtcttttaattcgtaatattgcatcatcattttattttatgttgactcttactccatttttcgagaaatttgatagggatataatgt 217  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615280 atcaacatttcttgtctttaacttcgtaatattgcatcatcattttattttatgttgactcttactccatttttcgagaaatttgatagggatataatgt 33615379  T
Q  218 actagatcttaaacgaggctttcattttagaatatgtggttgattttaacacaactccataaaatcggtttgtaaattgaaaattactctaacttgtaaa 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33615380 actagatcttaaacgaggctttcattttagaatatgcggttgattctaacacaactccataaaattggtttgtaaattaaaaattactctaacttgtaaa 33615479  T
Q  318 catgtggttgactttatcacaacttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaactt 417  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33615480 catgtggttgactttatcacaatttgacgcattacggaaacgtaggctaacaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaactt 33615579  T
Q  418 gtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33615580 gtgaaaatagggtttcagaattcaccataaattgaaaaaactctctaaaatattatttactgattgagtaaaagttatctcttaagctacaactgt 33615675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 627 - 889
Target Start/End: Original strand, 33615786 - 33616046
Alignment:
Q  627 ctagggaaaccctcctacatcacaactccactaaatcggtcggtatatgaaccgagaattaccgtcacttgtaaacacttgttgacaccatttt---tcc 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||   |||    
T  33615786 ctagggaaaccctcctacatcacaactccactaaatcggtcggtatatgaaccgagaattaccatcacttgtaaacacttgttgagaccatttttcatcc 33615885  T
Q  724 cggaactctagcacactcaaccatatccaatattatatgtaagcttagtgtgtggatataaatgatagatgacctcattnnnnnnncatgatagttaatg 823  Q
    || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||       ||| ||||  ||||    
T  33615886 cgaaactctagcacactcaaccatatccaatattatatataagcttaatgtgtggatataaatgatagatgacctgatt-agaaaacattataggaaatg 33615984  T
Q  824 acctaactaacaaattttgatggagactgcaatgcgaattaacttataaaaacgatttgacctaat 889  Q
    ||    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33615985 ac----ctaacaaattttgttggagactgcaatgcgaattaacttataaaaacgatttgacctaat 33616046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 342 - 474
Target Start/End: Original strand, 27822118 - 27822251
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| |  ||| ||    
T  27822118 tgacgcagtacggaagcgtaggctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttccgaaatcca 27822217  T
Q  442 ccataaattgag-aaaactctctaaaatattatt 474  Q
    ||| |||||||| |||||||||||||||||||||    
T  27822218 ccagaaattgagaaaaactctctaaaatattatt 27822251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 1127323 - 1127211
Alignment:
Q  362 ggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactct 461  Q
    ||||||| ||||| ||||||||||  ||||  ||||||||||||||||||||| |||||||||||| ||||| |||| ||||| ||||||||||||||||    
T  1127323 ggctagcgagcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaactct 1127224  T
Q  462 ctaaaatattatt 474  Q
    |||||||| ||||    
T  1127223 ctaaaataatatt 1127211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 357 - 513
Target Start/End: Complemental strand, 11659005 - 11658853
Alignment:
Q  357 gcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag-aa 455  Q
    ||||||| |||||||| | |||||||||| ||||| |||||| ||||||||||| |||||||||||||||| ||||  |||| ||||| |||||||| ||    
T  11659005 gcgtaggttagcaagcactaaacctagattgaaaa-gaacaaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaa 11658907  T
Q  456 aactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    ||||||||||||||||||    ||||||| |||||||| ||||||||| || ||||||    
T  11658906 aactctctaaaatattat----tgattgaataaaagttttctcttaggttataactgt 11658853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 3536123 - 3536034
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3536123 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 384 - 513
Target Start/End: Original strand, 24443113 - 24443238
Alignment:
Q  384 atagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatttactgattg 483  Q
    |||||||||||||| | ||||||||||||||||| | ||||||||||| ||||||  |||| ||||| ||||||||||||  ||||||||    ||| ||    
T  24443113 atagaaaaagaacaggcttgcaagcgacaaacttataaaaatagggttccagaatcaaccagaaattaagaaaactctctgcaatattat----tgaatg 24443208  T
Q  484 agtaaaagttatctcttaggctacaactgt 513  Q
    | ||||||||||||||||||||||||||||    
T  24443209 aataaaagttatctcttaggctacaactgt 24443238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 3542334 - 3542245
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  3542334 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 12882202 - 12882079
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||||||| ||||||| | |  ||||||||| || ||   ||||||||  ||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  12882202 cggaagcgtagactagcaaacactgaacctagattgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtttcggaatccaccagaaattg 12882103  T
Q  452 ag-aaaactctctaaaatattatt 474  Q
    || |||||||||||||||||||||    
T  12882102 agaaaaactctctaaaatattatt 12882079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 29340814 - 29340895
Alignment:
Q  350 tacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||||||||| | |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29340814 tacggaagcgtagggttagcaggcgctaaacctagatagaaaaa-aacaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 469
Target Start/End: Original strand, 8048978 - 8049092
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||||||||||||||||||   || |||||||  |||||||| ||||||||||| |||||||||||||||||| || | | | || ||||| ||||||||    
T  8048978 gaagcgtaggctagcaagcattaatcctagatt-aaaaagaaaaagtttgcaagtgacaaacttgtgaaaataaggctccgggatccaccagaaattgag 8049076  T
Q  454 aaaactctctaaaata 469  Q
    ||||||||||||||||    
T  8049077 aaaactctctaaaata 8049092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 342 - 427
Target Start/End: Complemental strand, 30050005 - 30049920
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 427  Q
    ||||||| |||||||||| ||| | ||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  30050005 tgacgcagtacggaagcgaagggttagcaagcgctaaacctatatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 30052264 - 30052207
Alignment:
Q  369 aagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 427  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30052264 aagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 18727186 - 18727115
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaa 424  Q
    ||||||||||||||||||| ||| |||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  18727186 cggaagcgtaggctagcaaacgctaaacctagattgaaaaa-cacaagttcgcaagcgacaaacttgtgaaaa 18727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 345 - 511
Target Start/End: Original strand, 18727846 - 18728011
Alignment:
Q  345 cgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaac-aagtttgcaagcgacaaacttgtgaaaa-tagggtttcagaattcac 442  Q
    |||| |||| ||| |||||||||||| ||| |||| |||||||||||||||  |||||||||||| | |||   ||||||| || |||| |  ||| |||    
T  18727846 cgcagtacgaaagtgtaggctagcaaacgctaaacttagatagaaaaagaaataagtttgcaagcaataaatcggtgaaaaataaggttccgaaatccac 18727945  T
Q  443 cataaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctc-ttaggctacaact 511  Q
    || ||||||||||||||||||||||||| ||    ||||||| ||||||||||| | |||||||||||||    
T  18727946 cagaaattgagaaaactctctaaaatataat----tgattgaataaaagttatccctttaggctacaact 18728011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 14238507 - 14238436
Alignment:
Q  360 taggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||||||| | | |||| || || |||||  ||||||||||||||||||||||||||||||||| ||||    
T  14238507 taggctagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggtt 14238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 18718201 - 18718279
Alignment:
Q  343 gacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaa 424  Q
    |||||| ||| |||| |||||||||||||||| |||||||||| ||||||| |||| || ||||  ||||||||||||||||    
T  18718201 gacgcagtacagaagtgtaggctagcaagcgctaaacctagattgaaaaag-acaaattcgcaa--gacaaacttgtgaaaa 18718279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 22889337 - 22889268
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaa 423  Q
    |||||||||||||||||||   |||||||||| ||||||  |||||||||||  |||||||||| |||||    
T  22889337 gaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 22889268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 22910879 - 22910810
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaa 423  Q
    |||||||||||||||||||   |||||||||| ||||||  |||||||||||  |||||||||| |||||    
T  22910879 gaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 22910810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 32361401 - 32361292
Alignment:
Q  399 gtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaa-ctctctaaaatattatttactgattgagtaaaagttatct 497  Q
    |||||||||||| ||| |||| |||||| |||| | ||||  || | |||||||||||| ||||||||||||||||    ||| ||| |||||||| |||    
T  32361401 gtttgcaagcgataaaattgtaaaaataaggttccggaatctacgagaaattgagaaaaactctctaaaatattat----tgaatgaataaaagttgtct 32361306  T
Q  498 cttaggctacaact 511  Q
    |||| |||||||||    
T  32361305 cttaagctacaact 32361292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 29342114 - 29342063
Alignment:
Q  341 ttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaa 391  Q
    |||||||| |||||||||||||| | ||||||||| ||||||||||||||||    
T  29342114 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa 29342063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 474
Target Start/End: Original strand, 34373879 - 34373918
Alignment:
Q  435 gaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  34373879 gaatccaccagaaattgagaaaactctctaaaatattatt 34373918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 474
Target Start/End: Complemental strand, 22873887 - 22873769
Alignment:
Q  358 cgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcacc-ataaattgagaaa 456  Q
    |||||||||||||| |  ||||||| || |||||   ||||||||||| |||||||||||||||||  | |||| | |||| |||| | |||||||||||    
T  22873887 cgtaggctagcaagtgttaaacctaaattgaaaagagacaagtttgcatgcgacaaacttgtgaaataaaggttccggaatccaccaaaaaattgagaaa 22873788  T
Q  457 a-ctctctaaaatattatt 474  Q
    | |||||| ||||| ||||    
T  22873787 agctctctgaaataatatt 22873769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 24664298 - 24664221
Alignment:
Q  397 aagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||||||| |||  ||| |||||| ||||||  ||| ||||| | ||| |||||||||||| ||||||||||    
T  24664298 aagtttgcaagcgataaaaatgtaaaaataaggtttcgaaatccaccaaagattaagaaaactctctgaaatattatt 24664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 33215185 - 33215246
Alignment:
Q  364 ctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaat 425  Q
    ||||||| ||| ||| ||||||  ||||  |||||||||||||||||||||| |||||||||    
T  33215185 ctagcaaacgctaaatctagattaaaaagaaacaagtttgcaagcgacaaacctgtgaaaat 33215246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 5e-43; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 341 - 470
Target Start/End: Complemental strand, 24731317 - 24731188
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  24731317 ttgacgcagtacgggagcgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaattc 24731218  T
Q  441 accataaattgagaaaactctctaaaatat 470  Q
    | || |||||||||||||||||||||||||    
T  24731217 atcagaaattgagaaaactctctaaaatat 24731188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 342 - 506
Target Start/End: Complemental strand, 24731121 - 24730961
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| ||| ||| ||||||||||||||||| |||  ||||| ||||| |||||||||||||||| ||||||||||||||||||| |||| |||| ||    
T  24731121 tgacgcagtacagaaccgtaggctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaataggatttcggaatcca 24731022  T
Q  442 ccataaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggcta 506  Q
     || ||||||||||||||||||||||||||||    ||| ||| |||||||||||| ||||||||    
T  24731021 tcaaaaattgagaaaactctctaaaatattat----tgaatgaataaaagttatctattaggcta 24730961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 2687821 - 2687699
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| | ||||||    
T  2687821 cggaagcgaagactagcgagcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttctagaatccacaagaaattg 2687722  T
Q  452 agaaaactctctaaaatattatt 474  Q
    |||||||||| | ||||||||||    
T  2687721 agaaaactctttgaaatattatt 2687699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 342 - 474
Target Start/End: Original strand, 2189722 - 2189853
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||  |||| ||    
T  2189722 tgacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataaggttttggaatcca 2189820  T
Q  442 ccataaattgagaaaactctctaaaatattatt 474  Q
    ||| ||| ||||||||  ||||||| |||||||    
T  2189821 ccaaaaaatgagaaaaaactctaaagtattatt 2189853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 42891664 - 42891753
Alignment:
Q  342 tgacgcattacggaagcgtagg-ctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42891664 tgacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 42890468 - 42890394
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaataggg 429  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42890468 gaagcgtaggctagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 353 - 474
Target Start/End: Complemental strand, 20693877 - 20693756
Alignment:
Q  353 ggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattga 452  Q
    |||||||||||||||| || |  |||||||||| |||||  ||||||||||||||||||||| ||||||||||| |||| | |||| || || |||||||    
T  20693877 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattga 20693778  T
Q  453 gaaaactctctaaaatattatt 474  Q
    |||||||||||||| |||||||    
T  20693777 gaaaactctctaaagtattatt 20693756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 355 - 509
Target Start/End: Complemental strand, 26374975 - 26374824
Alignment:
Q  355 aagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaga 454  Q
    ||||||| |||||||||||  || ||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||  ||| ||||| ||||| |||    
T  26374975 aagcgtaagctagcaagcgttaagcctagattgaaaa-gaacaagttcgcaagcgacaaacttgtaaaaatagggtttcgaaatccaccagaaattaaga 26374877  T
Q  455 aaactctctaaaatattatttactgattgagtaaaagttat--ctcttaggctacaa 509  Q
    |||||||||||| ||||||    ||| ||| ||||||||||  ||||||||||||||    
T  26374876 aaactctctaaattattat----tgaatgaataaaagttatgcctcttaggctacaa 26374824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 365 - 474
Target Start/End: Complemental strand, 16598315 - 16598205
Alignment:
Q  365 tagcaagcgcaaaacctagat-agaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcacca-taaattgagaaaactctc 462  Q
    |||||||||| |||| ||||| ||||| | |||||||||||| ||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||    
T  16598315 tagcaagcgctaaacttagattagaaaga-aacaagtttgcacgcgacaaacttgtgaaaatagggttccaaaatacaccagtaaattgagaaaactctc 16598217  T
Q  463 taaaatattatt 474  Q
    ||||||||||||    
T  16598216 taaaatattatt 16598205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 14130244 - 14130122
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||||||||| |||||||  ||| |||||| |||||   |||||||||||||||| ||| ||||||||||| |||| | |||| ||||| ||||||    
T  14130244 cggaagcgtaggcttgcaagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattg 14130145  T
Q  452 agaaaactctctaaaatattatt 474  Q
    ||||||||||| |||||||||||    
T  14130144 agaaaactctccaaaatattatt 14130122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 22921850 - 22921939
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  22921850 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 394 - 474
Target Start/End: Original strand, 2609547 - 2609627
Alignment:
Q  394 aacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||||||||||    
T  2609547 aacaagtttgcaagtgacaaacttgtgaaaatagggttacagaattcaccagaaattgataaagctctctgaaatattatt 2609627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 23570666 - 23570584
Alignment:
Q  349 ttacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  23570666 ttacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 6845425 - 6845336
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  6845425 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttacaagcgataaacttgtgaaaatagggtt 6845336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 22512046 - 22512135
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||| ||||| | ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  22512046 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 22519346 - 22519435
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||| ||||| | ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  22519346 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22519435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 22926656 - 22926737
Alignment:
Q  350 tacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||||||||| | || |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22926656 tacggaagcgtagggttagaaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 365 - 454
Target Start/End: Complemental strand, 18468714 - 18468626
Alignment:
Q  365 tagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaga 454  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| | |||| ||||| |||||||||    
T  18468714 tagcaagcgctaaacctaggtagaaaa-gaacaagcttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgaga 18468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 24577581 - 24577660
Alignment:
Q  395 acaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    ||||||||||||  ||||||| ||||||||| |||||||  ||| ||||| |||||||||||||||||||||||||||||    
T  24577581 acaagtttgcaaatgacaaacatgtgaaaatggggtttcgtaatccaccagaaattgagaaaactctctaaaatattatt 24577660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 369 - 476
Target Start/End: Original strand, 24578804 - 24578911
Alignment:
Q  369 aagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaat 468  Q
    |||||| |||||||||| |||||  ||||||||||||||||  |||  |||||||||||||||   |||| ||| | |||||| ||||||||||||||||    
T  24578804 aagcgctaaacctagatcgaaaagaaacaagtttgcaagcggtaaatctgtgaaaatagggttctggaatccactagaaattgtgaaaactctctaaaat 24578903  T
Q  469 attattta 476  Q
    ||||||||    
T  24578904 attattta 24578911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 37189956 - 37189866
Alignment:
Q  341 ttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||| ||||||||| |||| | ||||||| | ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  37189956 ttgacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaa-gaataagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 22520799 - 22520888
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||    
T  22520799 tgacgcaataaggaagcgtagggttagcaagcgctaaacctaggtagaaaa-gatcaagtttgcaagcgacaaatttgtgaaaatagggtt 22520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 414 - 510
Target Start/End: Complemental strand, 16598183 - 16598091
Alignment:
Q  414 acttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaac 510  Q
    |||||||||||||||||| |  ||| ||||| ||| ||||||||||||||||||||||||    ||| ||| |||||||| |||||||| |||||||    
T  16598183 acttgtgaaaatagggttccgaaatacaccagaaactgagaaaactctctaaaatattat----tgaatgaataaaagttgtctcttagtctacaac 16598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 513
Target Start/End: Original strand, 2188355 - 2188512
Alignment:
Q  356 agcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt--gag 453  Q
    |||||||||||||| |||  ||||||| ||  |||||||   ||||||||||||||||| |||| |||||||||||    ||| ||||| |||||  ||     
T  2188355 agcgtaggctagcatgcgttaaacctatattaaaaaagatttagtttgcaagcgacaaaattgtaaaaatagggttctgaaatccaccagaaattaagaa 2188454  T
Q  454 aaaactctctaaaatattatttactgattgagtaaaagttat--ctcttaggctacaactgt 513  Q
    ||||||||||||||||||||    ||||||| ||||||||||  | ||||||||||| ||||    
T  2188455 aaaactctctaaaatattat----tgattgaataaaagttatgccgcttaggctacatctgt 2188512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 2689183 - 2689104
Alignment:
Q  394 aacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||||||||||||||  ||||||||||||||| | | || || || |||||||||||||||||| |||| |||||    
T  2689183 aacaagtttgcaagcgacaaaactgtgaaaatagggttccggcatcca-cagaaattgagaaaactctctgaaattttatt 2689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 23573633 - 23573583
Alignment:
Q  380 ctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  23573633 ctagatagaaaat-aacaagtttacaagcgacaaacttgtgaaaatagggtt 23573583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 10629188 - 10629252
Alignment:
Q  412 aaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattattta 476  Q
    |||||||||| ||||||| |   |||||||||| |||||||||||| | ||||||||||||||||    
T  10629188 aaacttgtgagaatagggctctggaattcaccaaaaattgagaaaattttctaaaatattattta 10629252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 18180713 - 18180753
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaaccta 382  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  18180713 tgacgcagtacggaagcgtaggctagcaagcgctaaaccta 18180753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 26378090 - 26378031
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtt 401  Q
    |||||| | ||||||||||||||||||||||||| ||| |||||| | |||||||||||||    
T  26378090 ttgacgtagtacggaagcgtaggctagcaagcgctaaatctagattg-aaaagaacaagtt 26378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 30440786 - 30440743
Alignment:
Q  371 gcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaa 414  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||    
T  30440786 gcgctaaacctagatagaaaaagaagaagtttgcaagcggcaaa 30440743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 365 - 474
Target Start/End: Original strand, 25479427 - 25479537
Alignment:
Q  365 tagcaagcgcaaaacctagatagaaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctct 463  Q
    |||||| ||| |||||||| |  |||||||| |||| ||||||| ||||||  | |||||||| |||| | |||| ||||| || |||||||||||||||    
T  25479427 tagcaaacgctaaacctaggttaaaaaagaaacaaggttgcaagtgacaaatctttgaaaataaggttccggaatccaccagaatttgagaaaactctct 25479526  T
Q  464 aaaatattatt 474  Q
     |||| |||||    
T  25479527 gaaattttatt 25479537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 28263836 - 28263898
Alignment:
Q  412 aaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    ||||||||||||||||||||  ||| | || || |||||  ||||||||||||||||||||||    
T  28263836 aaacttgtgaaaatagggttctagagtccagcagaaattatgaaaactctctaaaatattatt 28263898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 30440728 - 30440694
Alignment:
Q  440 caccataaattgagaaaactctctaaaatattatt 474  Q
    ||||| |||||||||||||||||||||||||||||    
T  30440728 caccagaaattgagaaaactctctaaaatattatt 30440694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 26378029 - 26377988
Alignment:
Q  433 cagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||| ||| | |||||||||||||||||||||||||||||    
T  26378029 cagaatccactagaaattgagaaaactctctaaaatattatt 26377988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 354 - 509
Target Start/End: Complemental strand, 23457723 - 23457570
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||| |||||||||||||||| |||||||||| |||||  |||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||    
T  23457723 gaagtgtaggctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgag 23457624  T
Q  454 aaaactctctaaaatattatttactgattgagtaaaagtta--tctcttaggctacaa 509  Q
    ||||||||||||||||||||    ||| ||| |||||||||  |||||||||||||||    
T  23457623 aaaactctctaaaatattat----tgaatgaataaaagttaagtctcttaggctacaa 23457570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 33051699 - 33051575
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||   |||| ||| | ||||    
T  33051699 tacggaagcttaggctagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaat 33051600  T
Q  450 tgagaaaactctctaaaatattatt 474  Q
    |||||||||||||||||||||||||    
T  33051599 tgagaaaactctctaaaatattatt 33051575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 350 - 473
Target Start/End: Complemental strand, 15129470 - 15129347
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcacca-taaa 448  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||  ||||  |||    
T  15129470 tacggaagcgtaggctagcaagcgctaaacctagatagaaaa-gaacaagttcgcaagcgacaaacttgtgaaaatagggttccagaatcaaccagaaaa 15129372  T
Q  449 ttgagaaaactctctaaaatattat 473  Q
    | ||||||| ||||| |||||||||    
T  15129371 tagagaaaagtctctgaaatattat 15129347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 342 - 513
Target Start/End: Complemental strand, 36647381 - 36647212
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||    
T  36647381 tgacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttttggaatcca 36647283  T
Q  442 ccataaattga-gaaaactctctaaaatattatttactgattgagtaaaagttat--ctcttaggctacaactgt 513  Q
    ||| ||| ||| |||||  ||||||| ||||||    ||||||| ||||||||||  |||||||| |||| ||||    
T  36647282 ccaaaaaatgaggaaaaaactctaaagtattat----tgattgaataaaagttatgcctcttaggttacatctgt 36647212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 353 - 476
Target Start/End: Original strand, 5171596 - 5171719
Alignment:
Q  353 ggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattga 452  Q
    ||||||||||| || ||||||| ||| |||||| |||||   ||||||||||||||||||||||||| |||||||||||  ||||| ||| | |||||||    
T  5171596 ggaagcgtaggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattga 5171695  T
Q  453 gaaaactctctaaaatattattta 476  Q
    ||||||||||||||||||||||||    
T  5171696 gaaaactctctaaaatattattta 5171719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 8294657 - 8294537
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||| |||||||||||| || |||| ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||| ||| ||||| ||||||    
T  8294657 cggaagcataggctagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaatagtgtttcataatccaccagaaattg 8294558  T
Q  452 agaaaactctctaaaatattatt 474  Q
    | ||||  |||||||||||||||    
T  8294557 aaaaaa--ctctaaaatattatt 8294537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 27952317 - 27952407
Alignment:
Q  341 ttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27952317 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 358 - 474
Target Start/End: Complemental strand, 28737910 - 28737794
Alignment:
Q  358 cgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaa-cttgtgaaaatagggtttcagaattcaccataaattgagaaa 456  Q
    ||||||||||||||||| ||||||| || ||||| ||  ||||||||||| |||||| ||||||||||||| |||||||||| || || |||||||||||    
T  28737910 cgtaggctagcaagcgctaaacctaaattgaaaa-gagtaagtttgcaagagacaaaacttgtgaaaatagagtttcagaatccaacagaaattgagaaa 28737812  T
Q  457 actctctaaaatattatt 474  Q
    ||||||||||||||||||    
T  28737811 actctctaaaatattatt 28737794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 33655716 - 33655628
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||| ||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  33655716 tgacgcagtacggaagtgtaggttagcaagcgctaaacctagatagaaaaata-caagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 353 - 513
Target Start/End: Complemental strand, 21772452 - 21772296
Alignment:
Q  353 ggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattga 452  Q
    ||||||||||| |||| | ||| |||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||| | |||| || || |||||||    
T  21772452 ggaagcgtaggttagccaacgctaaacttagattgaaaaa-aacaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattga 21772354  T
Q  453 gaaaactctc-taaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    |||||||||| | |||||||||    |||  || |||||||||||||||| |||||||||||    
T  21772353 gaaaactctcttgaaatattat----tgaacgaataaaagttatctcttaagctacaactgt 21772296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 22011525 - 22011436
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  22011525 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 2156056 - 2155970
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 428  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  2156056 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcgagcgacaaacttgtgaaaatagg 2155970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 12966555 - 12966433
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||| ||||||||||| ||  ||| |||||| ||||| ||||||||| ||||||||| ||||||||||||||||||| |  ||| ||||| ||||||    
T  12966555 cggaagcataggctagcaaacgttaaatctagattgaaaa-gaacaagttcgcaagcgacgaacttgtgaaaatagggttccgaaatccaccaaaaattg 12966457  T
Q  452 ag-aaaactctctaaaatattatt 474  Q
    || |||||||||||||||||||||    
T  12966456 agaaaaactctctaaaatattatt 12966433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 27956154 - 27956243
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  27956154 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacctatgaaaatagggtt 27956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 31636426 - 31636337
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  31636426 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaactagtttgcaagcgacaaacttgtgaaaatatggtt 31636337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 361 - 474
Target Start/End: Original strand, 32161988 - 32162102
Alignment:
Q  361 aggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaac-t 459  Q
    |||| ||||||||  |||||||||| |||||  |||||||||||||| |||||||||||||||||||||||   |||| ||||| ||| ||||||||| |    
T  32161988 aggcaagcaagcgttaaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttcaggaatccaccagaaactgagaaaactt 32162087  T
Q  460 ctctaaaatattatt 474  Q
    |||||||||||||||    
T  32162088 ctctaaaatattatt 32162102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 4185010 - 4184885
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    ||||||||||||||||| ||||  | |||  |||||  ||||  || ||||| ||||||||||||||||||||||||||||||| |||| ||| | ||||    
T  4185010 tacggaagcgtaggctaacaagtactaaatatagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtttcggaatccacgagaaat 4184911  T
Q  450 tgag-aaaactctctaaaatattatt 474  Q
    |||| |||||||||||||||||||||    
T  4184910 tgagaaaaactctctaaaatattatt 4184885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 32163783 - 32163904
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||||| ||||||| |||||  |||||||||| |||||  || ||||||| ||||| |||||||||||||||| |||||| |||| ||  ||||||||||    
T  32163783 gaagcgaaggctagaaagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtttcggaatccatgataaattgag 32163882  T
Q  454 aaaac-tctctaaaatattatt 474  Q
    ||||| ||||||||||||||||    
T  32163883 aaaacttctctaaaatattatt 32163904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 513
Target Start/End: Complemental strand, 1518281 - 1518112
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| ||||||||||||  |||||||||||  ||||||||| ||||  || |||||| ||||||||| ||||| ||||||||||||| |  ||| ||    
T  1518281 tgacgcagtacggaagcgtatcctagcaagcgcttaacctagattgaaaggga-caagttcgcaagcgacgaacttatgaaaatagggttccgaaatcca 1518183  T
Q  442 ccataaattgag---aaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    | | ||||||||   |||||| |||||||||||||||    ||||| || ||||||||||||||| |||||||||    
T  1518182 ctagaaattgagaaaaaaactttctaaaatattattt----attgaatataagttatctcttaggttacaactgt 1518112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 31634193 - 31634107
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 428  Q
    ||||||| |||||||||||||| | ||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  31634193 tgacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaa-gaacaagtttgctagcgacaaacttgtgaaaatagg 31634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 513
Target Start/End: Complemental strand, 36615285 - 36615128
Alignment:
Q  356 agcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt--gag 453  Q
    |||||||||||||| |||  ||||||| ||  |||||||   ||||||||||||||||| |||| |||||| |||| | |||| ||||| |||||  ||     
T  36615285 agcgtaggctagcatgcgttaaacctatattaaaaaagatttagtttgcaagcgacaaaattgtaaaaataaggttccggaatccaccagaaattaagaa 36615186  T
Q  454 aaaactctctaaaatattatttactgattgagtaaaagttat--ctcttaggctacaactgt 513  Q
    ||||||||||||||||||||    ||||||| ||||||||||  ||||||||||||| ||||    
T  36615185 aaaactctctaaaatattat----tgattgaataaaagttatgcctcttaggctacatctgt 36615128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 18946031 - 18945917
Alignment:
Q  360 taggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaact 459  Q
    |||| |||||||||| |||| ||||| || ||  || || |||||||||||||||||||||| || || ||| | |||||||||| ||||| | |||| |    
T  18946031 taggttagcaagcgctaaacgtagattgagaagaaataaatttgcaagcgacaaacttgtgagaacagagttccggaattcaccagaaattaataaaatt 18945932  T
Q  460 ctctaaaatattatt 474  Q
    |||||||||||||||    
T  18945931 ctctaaaatattatt 18945917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 28737984 - 28737911
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 426  Q
    ||||||||||| |||||||| || |||||||||| ||||| || |||||||||||||||||||||| ||||||||    
T  28737984 cggaagcgtagtctagcaagtgctaaacctagattgaaaa-gagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 397 - 508
Target Start/End: Complemental strand, 36649001 - 36648890
Alignment:
Q  397 aagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt--gagaaaactctctaaaatattatttactgattgagtaaaagtta 494  Q
    |||||||||||||||||| |||| |||||||||||   |||| ||||| |||||  || ||||||||||||||||||||    ||||||| |||||||||    
T  36649001 aagtttgcaagcgacaaaattgtaaaaatagggttctggaatccaccagaaattaagaaaaaactctctaaaatattat----tgattgaataaaagtta 36648906  T
Q  495 t--ctcttaggctaca 508  Q
    |  |||||||||||||    
T  36648905 tgcctcttaggctaca 36648890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 1218321 - 1218419
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||| ||||| ||||||||| ||||||| || ||||||| ||||||||||||  ||||| |||  |  | |||||||||||| ||||||||||||||||    
T  1218321 aaacttagattgaaaaagaataagtttgtaaacgacaaatttgtgaaaatagaatttcataatctattagaaattgagaaaattctctaaaatattatt 1218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 12123950 - 12124027
Alignment:
Q  396 caagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattat 473  Q
    |||||||||||||||||||| |||||||||| ||||   |||| ||||| |||||||||||| ||||| |||| ||||    
T  12123950 caagtttgcaagcgacaaacctgtgaaaatatggttcaggaatccaccaaaaattgagaaaaatctctgaaattttat 12124027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 369 - 474
Target Start/End: Complemental strand, 33053479 - 33053374
Alignment:
Q  369 aagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaat 468  Q
    |||||| ||| |||||| ||||||||| ||||||| |||||||||| || ||||||| |||||    |||  |||| ||||||||||||  |||||||||    
T  33053479 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 33053380  T
Q  469 attatt 474  Q
    ||||||    
T  33053379 attatt 33053374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 23456630 - 23456533
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattat 473  Q
    ||||||| || |||||  |||||||||||||||||||||||| ||||||||  |||   |||| ||||  ||| |||||||||||| | |||||||||    
T  23456630 aaacctatattgaaaagaaacaagtttgcaagcgacaaacttttgaaaataaagttctggaatccaccggaaactgagaaaactctttgaaatattat 23456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 19582191 - 19582067
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagat-agaaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    |||||||| ||| |||||||||  ||||||| || | ||||| | ||||| ||||||  ||||||  |||||||| ||||||   |||||||| | ||||    
T  19582191 cggaagcgaaggatagcaagcgttaaacctatattaaaaaaacagacaagattgcaatagacaaatctgtgaaaaaagggttctcgaattcactagaaat 19582092  T
Q  450 tgagaaaactctctaaaatattatt 474  Q
    ||| |||||||||||||||||||||    
T  19582091 tgaaaaaactctctaaaatattatt 19582067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 2165948 - 2165899
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 426  Q
    |||||||||||||||| |||||||||||||||| |||||||| | ||||||    
T  2165948 aaacctagatagaaaa-gaacaagtttgcaagcaacaaacttatcaaaata 2165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 5e-37; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 340 - 474
Target Start/End: Original strand, 4888684 - 4888818
Alignment:
Q  340 cttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaatt 439  Q
    ||||||||| |||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | |||||    
T  4888684 cttgacgcaatacggaagcgtaggctagcatgcgctgaacctagatagaaaa-gaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaatt 4888782  T
Q  440 caccataaattgagaaa-actctctaaaatattatt 474  Q
    ||||| ||||||| ||| ||||||||||||||||||    
T  4888783 caccagaaattgaaaaacactctctaaaatattatt 4888818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 1786763 - 1786605
Alignment:
Q  352 cggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt 450  Q
    |||||||||||| | |||||| || ||||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||| || || |||||    
T  1786763 cggaagcgtaggattagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaatt 1786664  T
Q  451 gagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    | |||||||||||||||||||||||    | ||| ||||||||  ||||||||||||||||||    
T  1786663 gcgaaaactctctaaaatattattt----aatgaataaaagtttcctcttaggctacaactgt 1786605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 354 - 474
Target Start/End: Complemental strand, 5934681 - 5934561
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    ||||||||||||||||||||| |||||||||| |||||  ||||| ||||||||||||||||||||||||||||| ||||||||| ||  | ||||||||    
T  5934681 gaagcgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgag 5934582  T
Q  454 aaaactctctaaaatattatt 474  Q
    |||| ||||||||||||||||    
T  5934581 aaaattctctaaaatattatt 5934561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 352 - 511
Target Start/End: Complemental strand, 1369884 - 1369729
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||| |||||||||||||  |||||||||| |||||  ||||||||||||||||| |||||||| ||||||||||| | |||| ||||| ||||||    
T  1369884 cggaagcggaggctagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattg 1369785  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaact 511  Q
    |||||||||| |||||||||||    ||| | | |||||||| |||||||||||||||||    
T  1369784 agaaaactctataaaatattat----tgaattaataaaagttgtctcttaggctacaact 1369729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 11000836 - 11000958
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||| |||||||||||||||| |||||||||| |||||  |||||||| |||||||||||||| ||||||||||||||   |||| ||||| ||||||    
T  11000836 cggaagtgtaggctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaattg 11000935  T
Q  452 agaaaactctctaaaatattatt 474  Q
     ||||||||||||||||||||||    
T  11000936 ggaaaactctctaaaatattatt 11000958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 24840198 - 24840100
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||| |||||  |||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||    
T  24840198 aaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaactctctaaaatattatt 24840100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 366 - 474
Target Start/End: Complemental strand, 11229046 - 11228938
Alignment:
Q  366 agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaa 465  Q
    |||||| || |||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||| |||||| ||||| ||||||| ||||||||||||    
T  11229046 agcaagtgctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaattgataaaactctctaa 11228947  T
Q  466 aatattatt 474  Q
    |||||||||    
T  11228946 aatattatt 11228938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 337 - 431
Target Start/End: Original strand, 859151 - 859245
Alignment:
Q  337 caacttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  859151 caacttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 337 - 431
Target Start/End: Original strand, 1217155 - 1217249
Alignment:
Q  337 caacttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1217155 caacttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 6451760 - 6451917
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||| | |||| ||||||| ||| |||||| ||||   |||||||||||||||||||||| |||||||||| |||||| |||| || || ||||||    
T  6451760 cggaagcgaaagctatcaagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattg 6451859  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    | |||||||||||||||||||||    || ||| | |||||| |||||||||||||||||||    
T  6451860 aaaaaactctctaaaatattatt----gaatgaattaaagttgtctcttaggctacaactgt 6451917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 13882686 - 13882775
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882686 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 27142721 - 27142623
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||| |||||  |||||||||||||||||||||||||||||||||||||| | |||  ||||| |||||||||||||||||| ||||||||||    
T  27142721 aaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaaccaccagaaattgagaaaactctctgaaatattatt 27142623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 1365752 - 1365628
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    ||||||||  ||||||||||||||| |||||||||| ||||  ||||||||||| ||||||  ||||||||||||||||||| || ||| ||||| ||||    
T  1365752 tacggaaggataggctagcaagcgctaaacctagattgaaag-gaacaagtttgtaagcgatgaacttgtgaaaatagggttccataatccaccaaaaat 1365654  T
Q  450 tgag-aaaactctctaaaatattatt 474  Q
    |||| |||||||||||||||||||||    
T  1365653 tgagaaaaactctctaaaatattatt 1365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 342 - 428
Target Start/End: Original strand, 13886159 - 13886245
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 428  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13886159 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 8916389 - 8916509
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||||||| ||||| |||||  ||||||||||  |||| |||||||||||||| ||| ||||||||| |||||| |||   |||| ||||| ||||||||    
T  8916389 gaagcgtatgctagtaagcgttaaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgag 8916488  T
Q  454 aaaactctctaaaatattatt 474  Q
    |||||||||||||||||||||    
T  8916489 aaaactctctaaaatattatt 8916509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 376 - 513
Target Start/End: Complemental strand, 11228776 - 11228642
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcacca-taaattgagaaaactctctaaaatattatt 474  Q
    |||||| |||| ||||  |||||||||| |||||||||||||||| ||||||||||  ||||| |||||  ||||||||||||||||||||||||    |    
T  11228776 aaaccttgataaaaaagaaacaagtttggaagcgacaaacttgtggaaatagggttctagaatccaccagaaaattgagaaaactctctaaaata----t 11228681  T
Q  475 tactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    || ||||||| ||||||||| || |||||||||| ||||    
T  11228680 tagtgattgattaaaagttaccttttaggctacacctgt 11228642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 354 - 474
Target Start/End: Complemental strand, 30217890 - 30217770
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    ||||||||||||||||||||| |||||||||| ||||  ||||||||| ||||||||||||||||||||||||| |||    ||| |||||  |||||||    
T  30217890 gaagcgtaggctagcaagcgctaaacctagattgaaa--gaacaagttcgcaagcgacaaacttgtgaaaatagagttctgaaatccaccagtaattgag 30217793  T
Q  454 --aaaactctctaaaatattatt 474  Q
      || ||||||||||||||||||    
T  30217792 ataacactctctaaaatattatt 30217770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 340 - 459
Target Start/End: Original strand, 7803029 - 7803148
Alignment:
Q  340 cttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaatt 439  Q
    ||||||||| |||||||||||||| ||||||| |  |||||||| | |||||  ||||||||||||||| |||||||| |||||||| |||| | ||||     
T  7803029 cttgacgcagtacggaagcgtaggttagcaagggttaaacctaggtcgaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttccggaatc 7803128  T
Q  440 caccataaattgagaaaact 459  Q
    |||||||| |||||| ||||    
T  7803129 caccataatttgagacaact 7803148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 27309638 - 27309749
Alignment:
Q  365 tagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctcta 464  Q
    |||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    |||   ||| ||||| ||||||||||| |    
T  27309638 tagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttctctaatctgccaaaaattaagaaaactctcca 27309737  T
Q  465 aaatattattta 476  Q
    ||| ||||||||    
T  27309738 aaaaattattta 27309749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 1874619 - 1874497
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    |||||||||||| | |||||| | | |||||| ||| |||||  ||||||||||||| ||||||||||||||||||| ||||  ||||| ||||   |||    
T  1874619 tacggaagcgtatgttagcaaacactaaaccttgattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttcaagaatccacc---aat 1874523  T
Q  450 tga-gaaaactctctaaaatattatt 474  Q
    ||| ||||||||||||||||||||||    
T  1874522 tgaggaaaactctctaaaatattatt 1874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 350 - 475
Target Start/End: Complemental strand, 1883570 - 1883449
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    |||| ||||||| |||||||| | | |||||||||| |||||  ||||||||||||| ||||||||||||||||||| |||| ||||||  ||     ||    
T  1883570 tacgtaagcgtatgctagcaaacactaaacctagattgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttccagaatcaac-----at 1883476  T
Q  450 tgag-aaaactctctaaaatattattt 475  Q
    |||| ||||||||||||||||||||||    
T  1883475 tgagaaaaactctctaaaatattattt 1883449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 510
Target Start/End: Original strand, 3778759 - 3778880
Alignment:
Q  393 gaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaga------aaactctctaaaatattatttactgattgagt 486  Q
    |||||||||||||||||| |||||||||||||||||||| | |||| ||||| |||||||||      |||||||||||||||||||    ||||||| |    
T  3778759 gaacaagtttgcaagcgagaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaattaaactctctaaaatattat----tgattgaat 3778854  T
Q  487 aaaagttat--ctcttaggctacaac 510  Q
    |||||||||  ||||||| |||||||    
T  3778855 aaaagttattcctcttagactacaac 3778880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 35814902 - 35814828
Alignment:
Q  400 tttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||||||||||||| |||||| ||||   ||||  ||||||||||||||||||||||||||||||||||    
T  35814902 tttgcaagcgacaaacttgtaaaaataaggttcttgaatctaccataaattgagaaaactctctaaaatattatt 35814828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 342 - 513
Target Start/End: Complemental strand, 2768015 - 2767850
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| |||||||||||||| ||   | ||| |||||||||| ||||  ||| ||||| ||||||||| || ||| |||| ||||||||| |||| ||    
T  2768015 tgacgcagtacggaagcgtaggtta---aacgctaaacctagattgaaag-gaataagttcgcaagcgacgaatttgagaaa-tagggtttcggaatcca 2767921  T
Q  442 ccataaattgag-aaaactctctaaaatattatttactgattgagtaaaagtta--tctcttaggctacaactgt 513  Q
    ||| |||||||| ||||||||||||||||||||    | ||||| |||||||||  |||||||||||||||||||    
T  2767920 ccagaaattgagaaaaactctctaaaatattat----taattgaataaaagttatctctcttaggctacaactgt 2767850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 513
Target Start/End: Original strand, 1690196 - 1690298
Alignment:
Q  407 gcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggcta 506  Q
    |||||||| ||||||||||||||||   |||| || || |||||||||||| ||||||||||| |||||    | ||| |||||||| ||||||||||||    
T  1690196 gcgacaaatttgtgaaaatagggttctggaatccatcagaaattgagaaaattctctaaaatagtattt----aatgaataaaagttgtctcttaggcta 1690291  T
Q  507 caactgt 513  Q
    |||||||    
T  1690292 caactgt 1690298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 18790231 - 18790302
Alignment:
Q  400 tttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatatta 472  Q
    ||||||||||||||  | ||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||    
T  18790231 tttgcaagcgacaatat-gtgaaaataggattttagaatccaccagaaattgagaaaactctctaaaatatta 18790302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 4133284 - 4133359
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 427  Q
    |||||||||||||||||||  || |||| ||||| ||| | |||||| ||| ||||||||||||||||||||||||    
T  4133284 cggaagcgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatag 4133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 1220464 - 1220529
Alignment:
Q  365 tagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||| ||| ||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||    
T  1220464 tagcaaacgctaaacctacatagaaat-gaacaagtttgcaaacgacaaacttgtgaaaatagggtt 1220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 1753632 - 1753694
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaat 438  Q
    ||||||| || |||||  |||||||||||||||||||||||||||||||||| ||| ||||||    
T  1753632 aaacctaaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagagttccagaat 1753694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 13466808 - 13466731
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||| |||| ||||||||||| ||||||| ||  ||||  |||||||||||||   |||||||| |||||||||||||    
T  13466808 gaagagtagcctagcaagcgctaaacctatattaaaaagaaacaagtttgcaaaaaacaaacttatgaaaatagggtt 13466731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 428
Target Start/End: Original strand, 13886245 - 13886274
Alignment:
Q  399 gtttgcaagcgacaaacttgtgaaaatagg 428  Q
    ||||||||||||||||||||||||||||||    
T  13886245 gtttgcaagcgacaaacttgtgaaaatagg 13886274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 342 - 511
Target Start/End: Complemental strand, 40206237 - 40206072
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattca 441  Q
    ||||||| ||||||||||||||||||||||||| ||| ||| || |||| ||| |||||| ||||||||||||||||||||||||| ||||| |||||||    
T  40206237 tgacgcactacggaagcgtaggctagcaagcgctaaatctaaattgaaagaga-caagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattca 40206139  T
Q  442 ccataaattgag-aaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaact 511  Q
    ||| |||||||| |||| |||||||||||||||    ||| ||| ||||| ||||||||||| ||||||||    
T  40206138 ccagaaattgagaaaaattctctaaaatattat----tgaatgaataaaaattatctcttagactacaact 40206072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 350 - 474
Target Start/End: Original strand, 21433571 - 21433695
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaat 449  Q
    |||||||||||||  ||||  | || ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  21433571 tacggaagcgtagtatagctggtgctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggttccagaattcatcataaat 21433670  T
Q  450 tgagaaaactctctaaaatattatt 474  Q
    |||||||| ||||||||||||||||    
T  21433671 tgagaaaattctctaaaatattatt 21433695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 352 - 510
Target Start/End: Original strand, 13991389 - 13991543
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||||||||||||||||||| ||| |||||| |||||  |||||||||||||||||||||| || ||||||| ||||   |||| ||||| || |||    
T  13991389 cggaagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttg 13991488  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaac 510  Q
    ||||||||||||||||||||||    ||| ||| ||||||||  |||||||||||||||    
T  13991489 agaaaactctctaaaatattat----tgaatgaataaaagttccctcttaggctacaac 13991543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 22486792 - 22486905
Alignment:
Q  358 cgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaa 457  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||| | |||| ||||| ||||||||||||    
T  22486792 cgtaggctagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgac-aacttgtgaaaata-ggttccggaatccaccagaaattgagaaaa 22486889  T
Q  458 ctctctaaaatattat 473  Q
    |||||| ||| |||||    
T  22486890 ctctctgaaacattat 22486905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 10494958 - 10494860
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    |||||||||| |||||  |||||||||||||| ||||||| ||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttccggaattcaccagaaattgagaaaactctctaaaatattatt 10494860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 6659331 - 6659419
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||| ||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6659331 tgacgcagtacggaagtgtaggttagcaagcgctaaatctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 354 - 474
Target Start/End: Complemental strand, 7634157 - 7634037
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||||||| ||||| |||||  |||||||||| ||||| |||||||||||||| ||| ||||||||| |||||| |||   |||| ||||| ||||||||    
T  7634157 gaagcgtatgctagtaagcgttaaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgag 7634058  T
Q  454 aaaactctctaaaatattatt 474  Q
    |||||||||||||||||||||    
T  7634057 aaaactctctaaaatattatt 7634037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 370 - 474
Target Start/End: Original strand, 18689549 - 18689653
Alignment:
Q  370 agcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaata 469  Q
    ||||| |||||||||| |||||  || ||||||||| ||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||| |||||||    
T  18689549 agcgctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggttgcagaatccaccagaaattgagaaaactctataaaata 18689648  T
Q  470 ttatt 474  Q
    |||||    
T  18689649 ttatt 18689653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 394 - 470
Target Start/End: Complemental strand, 9260610 - 9260534
Alignment:
Q  394 aacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatat 470  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  9260610 aacaagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgagaaaactatctaaaatat 9260534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 18657054 - 18657174
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||||||| |||||  ||| | |||||||||| |||||  || ||||||||| ||||||||||||| |||||||| ||||||||| ||||  ||||||||    
T  18657054 gaagcgtaagctagagagcactaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgag 18657153  T
Q  454 aaaactctctaaaatattatt 474  Q
    |||||||| ||||||||||||    
T  18657154 aaaactctataaaatattatt 18657174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 38888024 - 38888118
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatat 470  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||  | |||||||||||| ||||||||||||    
T  38888024 aaacctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgagaaaattctctaaaatat 38888118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 341 - 469
Target Start/End: Complemental strand, 19935576 - 19935448
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    |||||||| ||| ||||||||||||||| ||||| ||||  ||||||||||| || || |||||||||||||||||| |||||||||||||   ||||||    
T  19935576 ttgacgcagtacagaagcgtaggctagccagcgctaaactcagatagaaaaa-aataaatttgcaagcgacaaacttatgaaaatagggttatggaattc 19935478  T
Q  441 accataaattgag-aaaactctctaaaata 469  Q
    | || |||||||| |||| |||||||||||    
T  19935477 atcaaaaattgagaaaaattctctaaaata 19935448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 365 - 467
Target Start/End: Original strand, 53477235 - 53477339
Alignment:
Q  365 tagcaagcgcaaaacctagataga--aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctc 462  Q
    |||||| ||| |||||||||||||  |||| ||||||||| |||||| ||||| ||||||||| |||||| ||||| ||||| |||||||||||||||||    
T  53477235 tagcaaacgctaaacctagatagagtaaaaaaacaagtttacaagcgtcaaacctgtgaaaatggggttttagaatccaccagaaattgagaaaactctc 53477334  T
Q  463 taaaa 467  Q
    |||||    
T  53477335 taaaa 53477339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 7723665 - 7723751
Alignment:
Q  343 gacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||| ||| ||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  7723665 gacgcagtacagaagcgtaggctagcaagcgctaaac-tagattgaaaa-gaacaagtttgcaagctacaaacttgtgaaaatagggtt 7723751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 24667745 - 24667657
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| || |||||||||||||||||||||  |||||||||||| ||||||| ||| | ||| || ||||||||||||||||||||||    
T  24667745 tgacgcagtatggaagcgtaggctagcaagcgttaaacctagatag-aaaagaagaagctcgcaggcaacaaacttgtgaaaatagggtt 24667657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 394 - 474
Target Start/End: Original strand, 13990729 - 13990809
Alignment:
Q  394 aacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    ||||||||||||||  ||||||||||||||||||||||   |||| || || ||||||| |||||||||||||||||||||    
T  13990729 aacaagtttgcaagtaacaaacttgtgaaaatagggttctggaatccatcagaaattgaaaaaactctctaaaatattatt 13990809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 17254893 - 17254968
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatag 427  Q
    ||||||||||||||||||| ||| |||| ||||| ||| | |||||| ||| ||||||||||||||||||||||||    
T  17254893 cggaagcgtaggctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatag 17254968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 54700614 - 54700686
Alignment:
Q  359 gtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||||||| ||| ||||||| || |||||  |||||||||||||| ||||||||||||| |||||||||    
T  54700614 gtaggctagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaacttgtgagaatagggtt 54700686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 3765241 - 3765339
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    ||||||| || |||||  ||||| |||  |||||||| |||||| ||| |||| |||  |||||||||| ||||||||||||||||| |||||||||||    
T  3765241 aaacctatattgaaaagaaacaattttataagcgacagacttgtaaaagtaggattttggaattcaccaaaaattgagaaaactctcaaaaatattatt 3765339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 358 - 461
Target Start/End: Original strand, 7724093 - 7724193
Alignment:
Q  358 cgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaa 457  Q
    |||| ||||||||| || ||||||| || |||||  | ||||||||| |||||||||||   |||||||||||| | |||| ||||| ||||||||||||    
T  7724093 cgtatgctagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaact---gaaaatagggttccggaatccaccagaaattgagaaaa 7724189  T
Q  458 ctct 461  Q
    ||||    
T  7724190 ctct 7724193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 50515905 - 50515978
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaat 425  Q
    |||||||| |||||||||||||| | || ||||  || ||  ||||||||||||||||||||||||||||||||    
T  50515905 cggaagcggaggctagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaacttgtgaaaat 50515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 474
Target Start/End: Complemental strand, 15848469 - 15848362
Alignment:
Q  366 agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaa 465  Q
    ||||| ||| ||| |||||| |||||  |||||||| ||||| |||||| ||||||||| || ||| |  ||| ||||| ||||||||||||||||||||    
T  15848469 agcaaacgctaaatctagattgaaaagaaacaagtt-gcaagtgacaaaattgtgaaaagagagttccgaaatccaccaaaaattgagaaaactctctaa 15848371  T
Q  466 aatattatt 474  Q
    |||| ||||    
T  15848370 aatactatt 15848362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 22486745 - 22486776
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaag 407  Q
    ||||||||||||||||||||||||||||||||    
T  22486745 aaacctagatagaaaaagaacaagtttgcaag 22486776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 361 - 509
Target Start/End: Complemental strand, 10927262 - 10927120
Alignment:
Q  361 aggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactc 460  Q
    |||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||| |||||||||||||||    
T  10927262 aggctagcaaacgctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaa--agggttccggaatccaccagaaattgagaaaactc 10927165  T
Q  461 tctaaaatattatttactgattgagtaaaagttatctcttaggctacaa 509  Q
    |||||||||||||||    | ||| |||||||| |||||||||||||||    
T  10927164 tctaaaatattattt----aatgaataaaagttgtctcttaggctacaa 10927120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 341 - 513
Target Start/End: Complemental strand, 31915639 - 31915471
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    |||||| | |||||||||| |||||||||||| | |||| ||| | |||| | |||||||||||||||||||||||||||||||||||||| | |||| |    
T  31915639 ttgacgtagtacggaagcgcaggctagcaagcactaaacttaggttgaaaga-aacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatcc 31915541  T
Q  441 accataaattgag-aaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    |||| |||||||| ||||||||||||||||     |||||||||| ||||||||||||||||||||||| ||||    
T  31915540 accagaaattgagaaaaactctctaaaata----ctactgattgaataaaagttatctcttaggctacatctgt 31915471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 12944206 - 12944073
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    ||||||||  ||| |||||||||||||||||||| ||| |||||| |||||  ||||||||||||| |||||||||||| |||||||||||   |||| |    
T  12944206 ttgacgcaacacgaaagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatcc 12944107  T
Q  441 accataaattgagaaaactctctaaaatattatt 474  Q
    |||| |||||||||||||||||||||||| ||||    
T  12944106 accagaaattgagaaaactctctaaaataatatt 12944073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 342 - 513
Target Start/End: Complemental strand, 23987665 - 23987492
Alignment:
Q  342 tgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatag----ggtttcagaa 437  Q
    ||||||| | |||||||||||| ||||||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||||     |||| | |||    
T  23987665 tgacgcaattcggaagcgtagggtagcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaacttgtgaaaatatagaaggttccggaa 23987566  T
Q  438 ttcaccataaattgagaaaactctctaaaatattatttactgattgagtaaaagtta--tctcttaggctacaactgt 513  Q
    | ||||| ||||||||| ||||||||||||||||||    ||||||| ||||| |||  ||||||| |||||||||||    
T  23987565 tccaccagaaattgagataactctctaaaatattat----tgattgaataaaatttatgtctcttacgctacaactgt 23987492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 28660756 - 28660879
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcacca-taaatt 450  Q
    |||||||||||| |||||| ||| ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |  ||| |||||  |||||    
T  28660756 cggaagcgtaggatagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccaccagaaaatt 28660855  T
Q  451 gagaaaactctctaaaatattatt 474  Q
     |||||||||||||||||||||||    
T  28660856 tagaaaactctctaaaatattatt 28660879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 50713792 - 50713670
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||| ||||||||| ||| ||| |||||||||| |||||   ||||||| ||| ||||||||||||||||||||||||||| |||| ||||| ||||||    
T  50713792 cggaaacgtaggctaacaaccgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattg 50713693  T
Q  452 agaaaactctctaaaatattatt 474  Q
    ||||||||||| |||||||||||    
T  50713692 agaaaactctcaaaaatattatt 50713670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 9031096 - 9030973
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||||||||||||||||  | ||||||| || ||||| ||| |||||||||||| | |||||| |||||||||||||  ||||| ||||||||||||    
T  9031096 cggaagcgtaggctagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggttgtagaatccaccataaattg 9030997  T
Q  452 agaaaac-tctctaaaatattatt 474  Q
    ||||||| ||||||||||||||||    
T  9030996 agaaaacttctctaaaatattatt 9030973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 353 - 474
Target Start/End: Complemental strand, 10928367 - 10928246
Alignment:
Q  353 ggaagcgtaggctagcaagcgcaaaacctagatagaaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||||||||||||||| || ||||||||||  ||||||| | ||||||| ||| |||||||||||||||||| |||||| |||| ||| ||||||||    
T  10928367 ggaagcgtaggctagcaagtgctaaacctagatt-aaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtttcggaatccactataaattg 10928269  T
Q  452 agaaaactctctaaaatattatt 474  Q
    |||||||||||||||||| ||||    
T  10928268 agaaaactctctaaaatactatt 10928246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 8967815 - 8967936
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagataga-aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattga 452  Q
    |||||| ||||| |||||||  ||||||||||||| ||||||||||||||||||  ||||||| | ||||||||||||| |||||| ||||| ||||||     
T  8967815 gaagcgaaggctcgcaagcgttaaacctagatagagaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaattgt 8967914  T
Q  453 gaaaactctctaaaatattatt 474  Q
    ||||||||||| ||||||||||    
T  8967915 gaaaactctctgaaatattatt 8967936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 8931310 - 8931220
Alignment:
Q  341 ttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||| |||||||||||||| | ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  8931310 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaa-aacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 28661078 - 28661196
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||||||||||||||| || ||||||| || || ||  ||||||||||||||||| |||| ||| |||||||||||||| ||| || || ||| ||    
T  28661078 cggaagcgtaggctagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaacctgtaaaaatagggtttcaaaatcca-caaaaaatg 28661176  T
Q  452 agaaaactctctaaaatatt 471  Q
    ||||||||||||||||||||    
T  28661177 agaaaactctctaaaatatt 28661196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 50857443 - 50857533
Alignment:
Q  341 ttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  50857443 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 10925816 - 10925662
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||| |||||||||||||| ||||||| || ||||||   ||| |||||||||||||||||||| |||||| ||||   |||| ||||  ||||||    
T  10925816 cggaagcggaggctagcaagcgctaaacctaaattgaaaaa---caattttgcaagcgacaaacttgtaaaaatatggttctggaatccaccgaaaattg 10925720  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    | ||||||||||||||||||||    ||| ||| ||||||||  |||||| |||||||||||    
T  10925719 aaaaaactctctaaaatattat----tgaatgaataaaagtttcctcttaagctacaactgt 10925662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 350 - 474
Target Start/End: Original strand, 40058110 - 40058236
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtg-aaaatagggtttcagaattcaccataaa 448  Q
    |||||||||||||||||||||||   ||||||| ||||||||  || ||||||||||||||||||||| || ||||||||||||||||||  ||||  ||    
T  40058110 tacggaagcgtaggctagcaagcagtaaacctaaatagaaaagaaataagtttgcaagcgacaaacttatgaaaaatagggtttcagaatcaaccaacaa 40058209  T
Q  449 ttgag-aaaactctctaaaatattatt 474  Q
    ||||| |||||||  ||||||||||||    
T  40058210 ttgagaaaaactccataaaatattatt 40058236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 358 - 513
Target Start/End: Complemental strand, 43681535 - 43681379
Alignment:
Q  358 cgtaggctagcaagcgcaaaacctagatagaaaaagaa-caagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaa 456  Q
    |||| |||||||||||| |||||||||| |||||| || ||||||||||||||||||| |||||||||||| | | ||||||  |||| ||||| |||||    
T  43681535 cgtatgctagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatagagatccagaatctaccagaaattaagaaa 43681436  T
Q  457 ac-tctc-taaaatattatttactgattgagtaaaagtt--atctcttaggctacaactgt 513  Q
    || |||| |||||||||||    ||| ||| ||||||||  |||| |||||||||||||||    
T  43681435 acttctcttaaaatattat----tgaatgaataaaagttacatctattaggctacaactgt 43681379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 239776 - 239644
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    |||||||||| |||||||||||||||||||| || |||| || ||  ||||  |||||||| ||||||| |||| || ||||||||||||| | |||| |    
T  239776 ttgacgcatt-cggaagcgtaggctagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaatttatgaaaatagggttccggaatcc 239678  T
Q  441 accataaattgagaaaactctctaaaatattatt 474  Q
    | |  ||||| ||||||| |||||||||||||||    
T  239677 aactgaaattaagaaaaccctctaaaatattatt 239644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 13444023 - 13444074
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 428  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13444023 aaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 21903830 - 21903674
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||| ||||| ||  |||||| |||| ||||| |||||  || ||||||| | ||||||| ||||||||||||||||||| |||| ||| | ||||||    
T  21903830 cggaagagtaggttaataagcgctaaacttagattgaaaagaaataagtttgtaggcgacaa-cttgtgaaaatagggtttcggaatccacaaaaaattg 21903732  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    |||||||| |||||| ||||||    | | ||||||||| || ||||||| |||||||||||    
T  21903731 agaaaactttctaaactattat----taagtgagtaaaatttgtctcttaagctacaactgt 21903674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 352 - 470
Target Start/End: Complemental strand, 8221567 - 8221449
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||| |||||||||||| || || ||||| |||| ||| |   |||||||||||| |||||||||| |||||||||||||   |||| ||||| ||||||    
T  8221567 cggatgcgtaggctagctagtgctaaaccaagattgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttctggaatccaccagaaattg 8221468  T
Q  452 agaaaactctctaaaatat 470  Q
    |||||||||| | ||||||    
T  8221467 agaaaactctttgaaatat 8221449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 394 - 509
Target Start/End: Original strand, 9194994 - 9195105
Alignment:
Q  394 aacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatttactgattgagtaaaagtt 493  Q
    |||||||||||||||||||||| ||||  |||||||||  | ||| ||||| ||||||| ||||||||||||| ||||||    ||| ||| |||||||     
T  9194994 aacaagtttgcaagcgacaaacatgtgttaatagggttcaataatccaccaaaaattgaaaaaactctctaaagtattat----tgaatgaataaaagtc 9195089  T
Q  494 atctcttaggctacaa 509  Q
     |||||||||||||||    
T  9195090 gtctcttaggctacaa 9195105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 354 - 428
Target Start/End: Complemental strand, 31913453 - 31913380
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 428  Q
    ||||| ||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||| ||||||||    
T  31913453 gaagcataggctagcaagcgctaaacctaggttgaaaga-aacaagtttgcaagcgacaaacttgtaaaaatagg 31913380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 513
Target Start/End: Original strand, 33152756 - 33152889
Alignment:
Q  379 cctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaatt--gagaaaactctctaaaatattattta 476  Q
    ||||||| |||||  ||||||||||||||||||||||||  || ||||||||| | |||| ||||| |||||  || |||||||| |||||||||||       
T  33152756 cctagattgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttccggaatccaccagaaattaagaaaaaactctataaaatattat--- 33152852  T
Q  477 ctgattgagtaa-aagttatctcttaggctacaactgt 513  Q
     ||||||| ||| |||||||||||||| ||||| ||||    
T  33152853 -tgattgaataataagttatctcttagactacatctgt 33152889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 28659577 - 28659699
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagataga--aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||||||||||||  || ||||||| || ||  |||| |||||||||||||| || |||||||||||||| || || |   || ||| | |||||     
T  28659577 gaagcgtaggctagcaaatgctaaacctatattgataaaaaaaacaagtttgcaagggataaacttgtgaaaattggattccgatatccactagaaatta 28659676  T
Q  452 agaaaactctctaaaatattatt 474  Q
    | ||||||||||||| |||||||    
T  28659677 aaaaaactctctaaagtattatt 28659699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 352 - 511
Target Start/End: Complemental strand, 18252495 - 18252340
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||| |||||||  ||||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  | ||| ||| | ||||||    
T  18252495 cggaagtgtaggcttacaagcgttaaacctagatagaaatagaacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattg 18252396  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaact 511  Q
    |||||||||| |||||||||||    ||| ||| || |||||||||||||||||||||||    
T  18252395 agaaaactctttaaaatattat----tgaatgaatagaagttatctcttaggctacaact 18252340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 26140422 - 26140300
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    ||||||| |||| |||||| ||| ||| |||||| |||| | |||||| ||||||||||||||||| |||||||||||||  ||||| ||||| ||||||    
T  26140422 cggaagcataggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttcaagaatccaccaaaaattg 26140323  T
Q  452 agaaaactctctaaaatattatt 474  Q
    |||||||||||||||||||||||    
T  26140322 agaaaactctctaaaatattatt 26140300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 21848966 - 21849054
Alignment:
Q  343 gacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21848966 gacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 22440936 - 22440814
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||||||||||||||||| || |||||||||||||||| ||||| ||| ||||||||||||||| ||| ||||||||| |||||| ||| | |||||     
T  22440936 cggaagcgtaggctagcaagtgctaaacctagatagaaaa-gaacatgttcgcaagcgacaaacttatgataatagggttccagaatccactagaaatta 22440838  T
Q  452 agaaaa-ctctctaaaatattatt 474  Q
    |||||| || ||||||||||||||    
T  22440837 agaaaacctatctaaaatattatt 22440814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 492638 - 492523
Alignment:
Q  360 taggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag-aaaac 458  Q
    ||||||||||||||| |||  ||||| |||||  ||||||||||||||||||||||||||||| |||||||||| ||||  |||| ||||| || |||||    
T  492638 taggctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtttcggaatcaaccagaaattaagaaaaac 492539  T
Q  459 tctctaaaatattatt 474  Q
    ||||| ||||||||||    
T  492538 tctctgaaatattatt 492523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 365 - 474
Target Start/End: Original strand, 19497327 - 19497437
Alignment:
Q  365 tagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag-aaaactctct 463  Q
    |||||||||| |||  |||| | |||||||||||||||||||||||||||||||||||||||||||| |  ||| || || |||||||| |||| |||||    
T  19497327 tagcaagcgctaaatgtagaaaaaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccatcaaaaattgagaaaaaatctct 19497426  T
Q  464 aaaatattatt 474  Q
    |||||||||||    
T  19497427 aaaatattatt 19497437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 40778785 - 40778875
Alignment:
Q  341 ttgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||| |||||||||| ||| | | ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  40778785 ttgacgcagtacggaagcgcagggttaacaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 352 - 428
Target Start/End: Original strand, 8456389 - 8456465
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagg 428  Q
    |||||||||||| |||||||||| |||||||||| |||||  |||||||| ||||||||| ||||||| ||||||||    
T  8456389 cggaagcgtagggtagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacgaacttgtaaaaatagg 8456465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 9868457 - 9868494
Alignment:
Q  394 aacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  9868457 aacaagtttacaagcaacaaacttgtgaaaatagggtt 9868494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 341 - 474
Target Start/End: Original strand, 2472688 - 2472821
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    |||||||| |||| |||||||||||||||||||| ||||||| || |||| ||| ||||||||||| |||||||||||||||||||||||| | |||| |    
T  2472688 ttgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagaga-caagtttgcaaccgacaaacttgtgaaaatagggttccggaatcc 2472786  T
Q  441 accataaattgag-aaaactctctaaaatattatt 474  Q
    |||| |||||||| ||||||| |||||||||||||    
T  2472787 accagaaattgagaaaaactcactaaaatattatt 2472821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 341 - 513
Target Start/End: Original strand, 365592 - 365760
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattc 440  Q
    |||||||||||||||||||||||||||||| ||| ||||||| | || |||| ||||| ||  ||||||||||||||||||||||||||||   |||| |    
T  365592 ttgacgcattacggaagcgtaggctagcaaacgctaaacctaaaaag-aaaataacaaattcccaagcgacaaacttgtgaaaatagggttcttgaatcc 365690  T
Q  441 acca-taaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    ||||  |||| ||||||| ||||  |||||||||    ||||||| ||||||||||||||||||||||||||||    
T  365691 accagaaaatagagaaaagtctcagaaatattat----tgattgaataaaagttatctcttaggctacaactgt 365760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 43303959 - 43304049
Alignment:
Q  341 ttgacgcattacggaagcgta-ggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||| |||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43303959 ttgacgcagtacggaagcgtaaggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 43306672 - 43306761
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  43306672 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcaacaaacttgtgaaaatagggtt 43306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 350 - 513
Target Start/End: Original strand, 8536377 - 8536540
Alignment:
Q  350 tacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaa----caagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccat 445  Q
    |||||||| ||||||||||||| || ||||||||||||||||| ||    |||| ||||||| |||| |||| |||||||||| || | |||| |||||     
T  8536377 tacggaagtgtaggctagcaagtgctaaacctagatagaaaaaaaaaaatcaaggttgcaagggacagacttttgaaaataggattccggaatccaccag 8536476  T
Q  446 aaattgagaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    |||||||| ||||||||||||||||||| |    | ||| ||||||||  ||||||||||||||||||    
T  8536477 aaattgaggaaactctctaaaatattatct----aatgaataaaagttgcctcttaggctacaactgt 8536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 52708923 - 52708839
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcaga 436  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  52708923 cggaagcgtaggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaacttgtgaaagtagggttccaga 52708839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 431
Target Start/End: Complemental strand, 5128998 - 5128909
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| ||| |||||||||| | |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5128998 tgacgcagtacagaagcgtagggttagcaggcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 376 - 512
Target Start/End: Original strand, 1320090 - 1320215
Alignment:
Q  376 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattattt 475  Q
    ||||||| |||||||||||||||||||||||||        ||||||||||||||| |||||| ||||| |||| ||||||| |||||||||||||||      
T  1320090 aaacctaaatagaaaaagaacaagtttgcaagca-------tgtgaaaatagggttccagaatccaccagaaatagagaaaattctctaaaatattat-- 1320180  T
Q  476 actgattgagtaaaagttatctcttaggctacaactg 512  Q
      ||| ||| ||||||||||||||||| |||||||||    
T  1320181 --tgaatgaataaaagttatctcttagcctacaactg 1320215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 3063737 - 3063826
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||| ||||||||| | ||||||||  |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  3063737 tgacgcagtacgaaagcgtagggttagcaagcgttaaacctagatagaaaa-gaaagagtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 3068875 - 3068964
Alignment:
Q  342 tgacgcattacggaagcgta-ggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||| |||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||  | |||||||| |||||||||||    
T  3068875 tgacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaa-gaacaagtttgcaaggaaaaaacttgtaaaaatagggtt 3068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 474
Target Start/End: Original strand, 2107866 - 2107985
Alignment:
Q  353 ggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattga 452  Q
    |||||| ||||||||||||||  ||| ||| || |||| | |||| |||||||||| |||||||||| |||||| |||| | |||| ||||| | |||||    
T  2107866 ggaagcttaggctagcaagcgttaaatctaaattgaaaga-aacaggtttgcaagcaacaaacttgtaaaaataaggttcc-gaatccaccagagattga 2107963  T
Q  453 gaaaactctctaaaatattatt 474  Q
    ||||||||||||||||| ||||    
T  2107964 gaaaactctctaaaatactatt 2107985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 355 - 467
Target Start/End: Complemental strand, 41152626 - 41152514
Alignment:
Q  355 aagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaga 454  Q
    |||| |||| |||||| ||| |||| | ||| |||||  || || ||| ||||||||||| |||||||||||| |||||||||| ||| | |||||||||    
T  41152626 aagcctaggttagcaaacgctaaacttggatggaaaataaataaatttacaagcgacaaatttgtgaaaatagtgtttcagaatccacaaaaaattgaga 41152527  T
Q  455 aaactctctaaaa 467  Q
    ||||||| |||||    
T  41152526 aaactctttaaaa 41152514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 45168343 - 45168434
Alignment:
Q  365 tagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaa---atagggtttcagaattcaccataaattgaga 454  Q
    ||||||| || |||||||||| |||| | ||||||||||||||||||||||||||||||   |||||||| |||||| ||| | |||||||||    
T  45168343 tagcaagtgctaaacctagattgaaata-aacaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgaga 45168434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 33175914 - 33175835
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    ||||||||||||||||||| ||  ||||||| || |||||   ||||||||||||  ||||||||| |||||||||||||    
T  33175914 cggaagcgtaggctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaatagggtt 33175835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 35908496 - 35908572
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaac-aagtttgcaagcgacaaacttgtgaaaataggg 429  Q
    ||||||| |||| |||||||||| ||||||||||||  ||||||| || ||||||| |||||||||||| |||||||||    
T  35908496 cggaagcataggttagcaagcgctaaacctagatag--aaagaacaaaatttgcaaacgacaaacttgtaaaaataggg 35908572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 9793 - 9659
Alignment:
Q  341 ttgacgcattacggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaac--ttgtgaaaatagggtttcagaat 438  Q
    |||||||||||  |||||||| |||||||||||  |||||||||| ||||| |||||||||| |||||||| |||  |||||||||||||||| |  |||    
T  9793 ttgacgcattatagaagcgtatgctagcaagcggtaaacctagattgaaaa-gaacaagtttccaagcgactaacacttgtgaaaatagggttccgaaat 9695  T
Q  439 tcaccataaattgagaaaactctctaaaatattatt 474  Q
     ||||| |||||||||||||||||| ||||||||||    
T  9694 ccaccagaaattgagaaaactctctgaaatattatt 9659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 145813 - 145690
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||| ||| |||||||| ||| |||||||||| |||||| | |||||||||||||||||| ||||| |||||||||||  ||||| ||||| ||||||    
T  145813 cggaagtgtaagctagcaatcgctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgtaaaaatagggttctagaatccaccaaaaattg 145714  T
Q  452 ag-aaaactctctaaaatattatt 474  Q
    || |||| | ||||||||||||||    
T  145713 agaaaaattatctaaaatattatt 145690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 143930 - 144084
Alignment:
Q  352 cggaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattg 451  Q
    |||||| ||||||||||||   | ||| ||| |||||| || | ||||||||||||||| ||| ||||||||||||| || | |||| ||||   |||||    
T  143930 cggaagtgtaggctagcaaattctaaatctaaatagaagaaaagcaagtttgcaagcgaaaaatttgtgaaaataggtttccggaatccacc---aattg 144026  T
Q  452 agaaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    ||||||||||||||||||||||    ||| | | ||||||||||||| || |||||||||||    
T  144027 agaaaactctctaaaatattat----tgaataaataaaagttatctcatatgctacaactgt 144084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 354 - 513
Target Start/End: Complemental strand, 49398 - 49244
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    |||||||| ||||| |||||   ||||||||| || || ||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||   |    
T  49398 gaagcgtaagctagaaagcgttgaacctagattgagaa-gaacaagtttgcaagcgacaaacttatgaaaatagggttccaaaatccaccataaataagg 49300  T
Q  454 aaaactctctaaaatattatttactgattgagtaaaagttatctcttaggctacaactgt 513  Q
    ||||||||||||||||| ||    | | ||| ||||||||| ||||||| ||||||||||    
T  49299 aaaactctctaaaatataat----taaatgaataaaagttacctcttagactacaactgt 49244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 355 - 470
Target Start/End: Complemental strand, 37786 - 37673
Alignment:
Q  355 aagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaga 454  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||| || |||  |||| |||||  ||    
T  37786 aagcgtaagctagaaagcgctaaacctagattgaaaa-gaacaagtttgcaagcgacaaacttatgaaaata-ggttccaaaatcgaccagaaattagga 37689  T
Q  455 aaactctctaaaatat 470  Q
    ||||||||||||||||    
T  37688 aaactctctaaaatat 37673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 10732 - 10663
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaa 423  Q
    |||||||||||||||||||   |||||||||| ||||||  |||||||||||  |||||||||| |||||    
T  10732 gaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaa 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 358 - 474
Target Start/End: Complemental strand, 16119 - 16004
Alignment:
Q  358 cgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaa 457  Q
    ||||||||| |||| || |||||||||||||||| ||||||||||||||| ||||||| | |||||||||  ||  ||||| ||||| ||||| ||||||    
T  16119 cgtaggctaacaagtgctaaacctagatagaaaa-gaacaagtttgcaagtgacaaacatctgaaaatagtattatagaatccaccagaaatttagaaaa 16021  T
Q  458 ctctctaaaatattatt 474  Q
    |||| ||||||||||||    
T  16020 ctctataaaatattatt 16004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 1725 - 1614
Alignment:
Q  363 gctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag-aaaactct 461  Q
    |||||||||||  |||||||||| |||| | ||||||||||||| |||||||||||| |||||| ||||   |||| ||||| || ||||| |||||| |    
T  1725 gctagcaagcgttaaacctagattgaaaga-aacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccaccagaatttgagaaaaactat 1627  T
Q  462 ctaaaatattatt 474  Q
    |||||||||||||    
T  1626 ctaaaatattatt 1614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 457
Target Start/End: Complemental strand, 14923 - 14821
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag 453  Q
    ||||||||||||||||||||| |||||| ||| |||| | || ||||| |||||||| |||||||||||||||||  | | |||| ||||| |||||||     
T  14923 gaagcgtaggctagcaagcgctaaaccttgattgaaata-aataagttggcaagcgaaaaacttgtgaaaataggaatccggaatccaccaaaaattgaa 14825  T
Q  454 aaaa 457  Q
    ||||    
T  14824 aaaa 14821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 46733 - 46806
Alignment:
Q  342 tgacgcattacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaac 415  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  46733 tgacgcagtacggaagcgtagggtgagcaagcgctaaacctagatagaaaa-gaacaagtttgcaagcgacaaac 46806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 45270 - 45351
Alignment:
Q  350 tacggaagcgtaggct-agcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 431  Q
    |||||||||||||| | ||||||||| |||  |||||| | |||||||||||||||||||||||||||| |||||||| ||||    
T  45270 tacggaagcgtagggttagcaagcgctaaaattagata-agaaagaacaagtttgcaagcgacaaacttatgaaaataaggtt 45351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 15127 - 15196
Alignment:
Q  405 aagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaaaactctctaaaatattatt 474  Q
    ||||||| ||||||| |||||||||||  ||||| ||||| ||||||||||||  |||||||||||||||    
T  15127 aagcgacgaacttgtaaaaatagggttctagaatccaccagaaattgagaaaatcctctaaaatattatt 15196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 11601 - 11672
Alignment:
Q  354 gaagcgtaggctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 426  Q
    |||||||||||||||||||   || |||||||  |||||||| ||||||||||| ||||||||||||||||||    
T  11601 gaagcgtaggctagcaagcattaatcctagatt-aaaaagaaaaagtttgcaagtgacaaacttgtgaaaata 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 17707 - 17596
Alignment:
Q  363 gctagcaagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgag-aaaactct 461  Q
    |||||||||||  |||||||||| |||| | ||||||||||||| |||||||||||| |||||| ||||   |||| ||||  || ||||| |||||| |    
T  17707 gctagcaagcgttaaacctagattgaaaga-aacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccacctgaatttgagaaaaactat 17609  T
Q  462 ctaaaatattatt 474  Q
    |||||||||||||    
T  17608 ctaaaatattatt 17596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 14175 - 14238
Alignment:
Q  392 agaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaa 455  Q
    ||||||||||||||||||| ||| |||||||||||| ||||  |||| || || ||||||||||    
T  14175 agaacaagtttgcaagcgataaatttgtgaaaatagtgttttggaatccatcaaaaattgagaa 14238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 58669 - 58606
Alignment:
Q  392 agaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgagaa 455  Q
    ||||||||||||||||||| ||| |||||||||||| ||||  |||| || || ||||||||||    
T  58669 agaacaagtttgcaagcgataaatttgtgaaaatagtgttttggaatccatcaaaaattgagaa 58606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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