View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7300_low_3 (Length: 654)
Name: NF7300_low_3
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7300_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 10494296 - 10493908
Alignment:
| Q |
1 |
aggtacacagtcactataatgcaattgatcatttcctacacattggaaaagcgaatcatggcaatattgtttatcaaaaacatttgcacctgaactcaa- |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10494296 |
aggtacacagtcactataatgcaattgatcatttcctacacattggaaaagcgaatcatggcaatattgtttatcaaaaacatttgcacctgaactcaaa |
10494197 |
T |
|
| Q |
100 |
gcctaagtttatgtgcttttgagaaaccaattcaacaccatttttatcaccttatattgttgcaggattttaaacacatgatgacctttcttgatgaact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10494196 |
gcctaagtttatgtgcttttgagaaaccaattcaacaccatttttatcaccttatattgttgcaggattttaaacacatgatgacctttcttgatgaact |
10494097 |
T |
|
| Q |
200 |
atattagatttctccaagaaaggaaaaagttcttctcctatgttactaggaccatcattccttttaaattttaatataactttctccgactcagttagtg |
299 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10494096 |
atattagattcctccaagaaaggaaaaagttcttctcctatgttactaggaccatcattccttttaaattttaatataactttctccgactcagttagtg |
10493997 |
T |
|
| Q |
300 |
atggcacaactgcattagtagattattccatttattggttgactggatacatttgatcatcgacaggatcaaccaaatattcgttgaaa |
388 |
Q |
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| T |
10493996 |
atggctcaactgcattagtagattattccatttattggttgactggatacatttgatcatcgacatgatcagccaaatattcgttgaaa |
10493908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 53 - 549
Target Start/End: Original strand, 2317401 - 2317898
Alignment:
| Q |
53 |
gaatcatggcaatattgtttatcaaaaacatttgcacctgaactcaagcctaagtttatgtgcttttgagaaaccaattcaacaccatttttatcacctt |
152 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| || |||| |
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| T |
2317401 |
gaatcatgacaatattgtttatcaaaaacatctgcacctgaactcgagcctaagtttatgtgctcttgagaaaccaattcagcaccatttttctcccctt |
2317500 |
T |
|
| Q |
153 |
atattgttgcaggattttaaacacatgatgacctttcttgatgaactatattagatttctccaagaaaggaaaaagttcttctcctatgttactaggacc |
252 |
Q |
| |
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||||||||||||||||| |||| || || ||||||||||||||| |||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
2317501 |
ctattgttgcaggattttcaacatattctgtcctttcttgatgaaccatattagattcctccaacaaaggcaaaagttcttctgctatgttactaggacc |
2317600 |
T |
|
| Q |
253 |
atcattccttttaaattttaatataactttctccgactcagttagtgatgg---cacaactgcattagtagattattccatttattggttgactggatac |
349 |
Q |
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||| | || | |||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||| |||||||| | |||||||||||||| |
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| T |
2317601 |
gtcacttctatcaaattttaatataactttctccgactcagttagtgatgatgacccaaccgcatcagtagattgttccatttctgggttgactggatac |
2317700 |
T |
|
| Q |
350 |
atttgatcatcgacaggatcaaccaaatattcgttgaaaaatgccggaggactgcaacaatttgggtattcacgtcatatttgaggtcaaaatctttatg |
449 |
Q |
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||||||||||| || |||||| |||||||||| | || | |||| |||||||||| | ||||||||||| |||||| |||||||||||||| || || |
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| T |
2317701 |
atttgatcatccacgggatcagccaaatattcatcgacagatgctggaggactgctgc--tttgggtattcgcgtcattcttgaggtcaaaatccttttg |
2317798 |
T |
|
| Q |
450 |
agcaactgttttaaacacttctggcaatgattgtggtgaatttaatttcttcgattcactacgagcttcaccaagattgttgtctccaatgttactttga |
549 |
Q |
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| T |
2317799 |
agcaactggtataaacacctctggcaatggcagttgagaattcaatttcttcaaatcgctatgagcttcaccaagactgttgtctcctatgttactttga |
2317898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 2308876 - 2308949
Alignment:
| Q |
581 |
cctttccgagtattttgtttcacggtggcgaccactaatacgcggtgacttgaatacgagaggtggagagttga |
654 |
Q |
| |
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| T |
2308876 |
cctttccgagtattgtgtttcatggtggggagcactgatacgcgatgacttgaatacgagaggtggagaattga |
2308949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 2318016 - 2318089
Alignment:
| Q |
581 |
cctttccgagtattttgtttcacggtggcgaccactaatacgcggtgacttgaatacgagaggtggagagttga |
654 |
Q |
| |
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|||||||||||||| ||||||||||||| || |||| ||||| ||||||||||||||||| |||||||| |||| |
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| T |
2318016 |
cctttccgagtattgtgtttcacggtggggagcactgatacgtggtgacttgaatacgaggggtggagaattga |
2318089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 2688514 - 2687972
Alignment:
| Q |
1 |
aggtacacagtcactataatgcaattgatcatttcctacacattggaaaagcgaatcatggcaatattgtttatcaaaaacatttgcacctgaactcaag |
100 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| | |||| | | |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2688514 |
aggtacacaatcactatgatgtcgttgatcatttcatgcacactaggaaagtgaatcatggcaatattgtttacaaaaaacatttgcacctgaactcaag |
2688415 |
T |
|
| Q |
101 |
cctaagtttatgtgcttttgagaaaccaattcaacaccatttttatcaccttatattgttgcaggattttaaacacatgatgacctttcttgatgaacta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| || ||||||||||||||| |
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| T |
2688414 |
tataagtttatgtgctcttgagaaaccaattcaacaccatttttatccacttatattgttgcaggattttcaactcatgttgtcctttcttgatgaac-- |
2688317 |
T |
|
| Q |
201 |
tattagatttctccaagaaaggaaaaagttcttctcctatgttactaggaccatcattccttttaaattttaatataactttctccgactcagttagtga |
300 |
Q |
| |
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|||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |
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| T |
2688316 |
cattagattcctccaacaaagacaaaagttcttctccaatgttactaggaccatcattcctatcaaattttaatataactttctttgactcagttagtga |
2688217 |
T |
|
| Q |
301 |
tggcacaactgcattagtagattattccatttattggttgactggatacatttgatcatcgacaggatcaaccaaatattcgttgaaaaatgccggagga |
400 |
Q |
| |
|
|||| ||||||||| |||||||| | ||||| |||||||| ||||||||||||||||| ||| ||| | | |||||||| | || | || ||| || |
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| T |
2688216 |
tggcccaactgcatcagtagattgat-catttcttggttgattggatacatttgatcattgacgtgattagctaaatattcatcgacagctgttggatga |
2688118 |
T |
|
| Q |
401 |
ctgcaacaatttgggtattcacgtcatatttgaggtcaaaatctttatgagcaactgttttaaacacttctggcaatgattgtggtgaatttaatttctt |
500 |
Q |
| |
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|| |||| |||||||| || |||||| |||||||||||||| || | | |||||||| ||||||| ||||| | || |||| | | ||| |||||||| |
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| T |
2688117 |
ctacaac--tttgggtactcgcgtcattcttgaggtcaaaatccttcttatcaactgttataaacacctctggaagtggttgttgaggattcaatttctt |
2688020 |
T |
|
| Q |
501 |
cgattcactacgagcttcaccaagattgttgtctccaatgttactttga |
549 |
Q |
| |
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| || ||||| ||||||||||||| |||| ||||| |||||||||||| |
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| T |
2688019 |
cagtttactacaagcttcaccaagactgtt-tctcccatgttactttga |
2687972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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