View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7300_low_8 (Length: 428)
Name: NF7300_low_8
Description: NF7300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7300_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 13803660 - 13803926
Alignment:
| Q |
1 |
ttgaaatttaaaaaatttattggttccaaaaacttatttaacccttttatttttgttcataatggtcagtatttaagcaactctagatatattattaact |
100 |
Q |
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| T |
13803660 |
ttgaaatttaaaaaatttattgattccaaaaacttatttaacc-ttttatttttgttcataatgattggtgttttagcaactctaaatatattattaact |
13803758 |
T |
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| Q |
101 |
tatactctcatgggatgaatgtttgaatgaaggtttttggagatgaggactttcataaaatattaaaagttataaagaataattgaaattcgaaaataaa |
200 |
Q |
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| T |
13803759 |
tatactctcatgggatgaatgtttgaatgaaggtttttggagatgaggactttcataaaatattaaaagttataaagaataattgaaatttgaaaataaa |
13803858 |
T |
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| Q |
201 |
tttgatgttattgaaatgttttatgattatcgatcttgttatacttttaattttttaaaatattaaaa |
268 |
Q |
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| T |
13803859 |
tttgatgttattgaaatgttttatgattattgatcttgttatacttttaatttttttaaatattaaaa |
13803926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 266 - 412
Target Start/End: Original strand, 13806980 - 13807126
Alignment:
| Q |
266 |
aaatattgacatagtcatccgtctaaaatcctcgaaatatatagatagatatcacaccgtttatttgaattccccgttgttaaatacatgctcaaatttg |
365 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
13806980 |
aaatattgacatagtcatccgtctaaaatccttgaaatatatagatagatattacaccttttatttgaattcaccgatgttaaatacatgctcaaatttg |
13807079 |
T |
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| Q |
366 |
aagaaaaagattacgaaacaatatttcatatctgctggggaataaat |
412 |
Q |
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| T |
13807080 |
aagaaaaagattacgaaacaatatttcatatcggctggggaataaat |
13807126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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