View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_high_1 (Length: 592)
Name: NF7301_high_1
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 45698989 - 45698493
Alignment:
| Q |
1 |
atcaatctcctctttcttctctcatccaggtaaggtaacataacaatatggattatctatctatctatctatttttaatttaatattaattttctgcctt |
100 |
Q |
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| T |
45698989 |
atcaatctcctctttcttctctcatccaggtaaggtaacataacaatatggattatctatctatctat----ttttaatttaatattaattttctgcctt |
45698894 |
T |
|
| Q |
101 |
tggggggagggtttggcagctaagatagtttgagaattcatttcttttctttttgcaggctgaaatgatcttcttctctgccaaaacaaatattatatta |
200 |
Q |
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| T |
45698893 |
tggggggagggtttggcagctaagatagtttgagaattcatttcttttctttt-gcaggctgaaatgatcttcttctctgccaaatcaaatattatatta |
45698795 |
T |
|
| Q |
201 |
tacatttcccgaaatgcaattagcttcaaacactgacaaccaagattcttcttcttc------agaaacccaacccatattgaagaatcacctctgtgaa |
294 |
Q |
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| T |
45698794 |
tacatttcccgaaatgcaattagcttcaaacactgacaaccaagattcttcttcttcttcttcagaaacccaacccatattgaagaatcacctctgtgaa |
45698695 |
T |
|
| Q |
295 |
attattcctattcctgccaacgacgaagacgatgactacgacaatgagtcttctcgtcttcttgttgtaaatgctgatcacccacaatgccggatatgcc |
394 |
Q |
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| T |
45698694 |
attattcctattcctgccaacgacgaagacgatgactacgacaatgagtcttctcatcttcttgttgtaaatgctgatcacccacaatgccggatatgcc |
45698595 |
T |
|
| Q |
395 |
ttgatcttggaggagaagacttaattgccccctgccattgcaaaggtacccaaaagtatgtccacagatcatgtctcgataattggaggtctaccaaggt |
494 |
Q |
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| T |
45698594 |
ttgatcttggaggagaagacttaattgccccctgccattgcaaaggtacccaaaagtatgtccacagatcatgtctcgataattggaggtctaccaaggt |
45698495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 494 - 587
Target Start/End: Complemental strand, 45698468 - 45698377
Alignment:
| Q |
494 |
taatcataatcatcttccttatgctttgcttattcaccctttttcattcattcattctttttcctttcctaggagggctttgcttcttctcact |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45698468 |
taatcataatcatcttccttatgctttgcttattcacccttt--cattcattcattctttttcctttcctaggagggctttgctttttctcact |
45698377 |
T |
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