View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7301_high_2 (Length: 539)

Name: NF7301_high_2
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7301_high_2
NF7301_high_2
[»] chr1 (3 HSPs)
chr1 (247-447)||(9799142-9799342)
chr1 (19-194)||(9798914-9799089)
chr1 (247-407)||(9790124-9790287)
[»] chr4 (2 HSPs)
chr4 (133-179)||(20246231-20246277)
chr4 (128-164)||(13985941-13985977)
[»] scaffold0014 (1 HSPs)
scaffold0014 (128-164)||(97940-97976)
[»] chr7 (1 HSPs)
chr7 (128-164)||(16254471-16254507)
[»] chr6 (1 HSPs)
chr6 (128-164)||(26129191-26129227)
[»] chr3 (2 HSPs)
chr3 (128-164)||(31197296-31197332)
chr3 (128-164)||(52770984-52771020)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 247 - 447
Target Start/End: Original strand, 9799142 - 9799342
Alignment:
Q  247 gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctatctaactgtataacatctgtaactaacaaactctataagctg 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799142 gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctatctaactgtataacatctgtaactaacaaactctataagctg 9799241  T
Q  347 tgctattctatgtaaggtacttggtaaaggaaacttagagcacaagttaatttgcacaactagttaactatggtgtaaccagaagtttaacagatagtat 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799242 tgctattctatgtaaggtacttggtaaaggaaacttagagcacaagttaatttgcacaactagttaactatggtgtaaccagaagtttaacagatagtat 9799341  T
Q  447 a 447  Q
    |    
T  9799342 a 9799342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 9798914 - 9799089
Alignment:
Q  19 gttgagacggatcttgaatcggaggcaccacatttgctccgccattaacgacagcgttagcatgcaccatggtgaagaagaagaaaacgataaggaaccg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798914 gttgagacggatcttgaatcggaggcaccacatttgctccgccattaacgacagcgttagcatgcaccatggtgaagaagaagaaaacgataaggaaccg 9799013  T
Q  119 agaagaaagcgatgcgcagcagtgctcaaaagagctttgataccatcatgaagttcatcatcttcttgatgatgat 194  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9799014 agaagaaagcgatgcgcagcagtgctcaaaagagctctgataccatcatgaagttcatcatcttcttgatgatgat 9799089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 247 - 407
Target Start/End: Original strand, 9790124 - 9790287
Alignment:
Q  247 gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctat---ctaactgtataacatctgtaactaacaaactctataag 343  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||   |||||||||||||| |||||||| ||||||||||||||    
T  9790124 gtatattctgttattcaatgatgtgagttagttacaatatatgtttatatagaggatatgatctaactgtataacagctgtaactgacaaactctataag 9790223  T
Q  344 ctgtgctattctatgtaaggtacttggtaaaggaaacttagagcacaagttaatttgcacaact 407  Q
     |||||||||||||||| ||||| |||||| ||||||||| |||||||||||| ||||||||||    
T  9790224 ttgtgctattctatgtagggtacatggtaagggaaacttaaagcacaagttaacttgcacaact 9790287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 20246231 - 20246277
Alignment:
Q  133 cgcagcagtgctcaaaagagctttgataccatcatgaagttcatcat 179  Q
    |||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  20246231 cgcatcagagctcaaaagagatttgataccatcatgaagttcgtcat 20246277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 13985977 - 13985941
Alignment:
Q  128 cgatgcgcagcagtgctcaaaagagctttgataccat 164  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  13985977 cgatgcgcagcagagctcaaaagagctctgataccat 13985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 97940 - 97976
Alignment:
Q  128 cgatgcgcagcagtgctcaaaagagctttgataccat 164  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  97940 cgatgcgcagcagagctcaaaagagctctgataccat 97976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 16254507 - 16254471
Alignment:
Q  128 cgatgcgcagcagtgctcaaaagagctttgataccat 164  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  16254507 cgatgcgcagcagagctcaaaagagctctgataccat 16254471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 26129227 - 26129191
Alignment:
Q  128 cgatgcgcagcagtgctcaaaagagctttgataccat 164  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  26129227 cgatgcgcagcagagctcaaaagagctctgataccat 26129191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 31197296 - 31197332
Alignment:
Q  128 cgatgcgcagcagtgctcaaaagagctttgataccat 164  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  31197296 cgatgcgcagcagagctcaaaagagctctgataccat 31197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 52771020 - 52770984
Alignment:
Q  128 cgatgcgcagcagtgctcaaaagagctttgataccat 164  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  52771020 cgatgcgcagcagagctcaaaagagctctgataccat 52770984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University