View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_high_9 (Length: 249)
Name: NF7301_high_9
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 178
Target Start/End: Complemental strand, 37992773 - 37992664
Alignment:
| Q |
67 |
gctcatttttgcatgaagtaaaattaatcccctttttgtgtttcaatannnnnnnnnnnagaggaaggcaaataacgtcaattttgttttcaacttgtgg |
166 |
Q |
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| T |
37992773 |
gctcatttttgcatgaagtaaaattaatcccctttttgtgtttcaata-ttttttttttagaggaaggcaaataac-tcaattttgttttcaacttgtgg |
37992676 |
T |
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| Q |
167 |
actatccttttt |
178 |
Q |
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| T |
37992675 |
actatccttttt |
37992664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 37991545 - 37991483
Alignment:
| Q |
171 |
tccttttttatgttt-gagagtaactttttaatgagcttgtatcttgggttctttttcaggat |
232 |
Q |
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| T |
37991545 |
tccttttttatgttttgagagtaactttttaatgagcttgtatcttgggttctttttcaggat |
37991483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37992832 - 37992791
Alignment:
| Q |
1 |
cttctaaagtttaaacttagaattatctatcacatttattaa |
42 |
Q |
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| T |
37992832 |
cttctaaagtttaaacttagaattatctattacatttattaa |
37992791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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