View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_low_13 (Length: 241)
Name: NF7301_low_13
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 498805 - 498995
Alignment:
| Q |
1 |
acttgtatggttaagccgacggcagaaaaccatacaagcagtagtttagtatgcgttacaacaaagacaagttgaaatttgcaacactaaagtataagtg |
100 |
Q |
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| T |
498805 |
acttgtatggttaagccggcggcagaaaaccatacaagcagtagtttagtatgcgttacaacaaagacaagttgaaatttgcaacactaaagtataagtg |
498904 |
T |
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| Q |
101 |
attgtctataaactagttttgaatttttaacactgcactatttgtcacgatatggatcaagtttgttgtgctatgcacgacacttagatta |
191 |
Q |
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| T |
498905 |
attgtctataaactagttttgaatttttaacactgcactatttgtcacgatatggatcaagtttgttgtgctatgcacgacacttagatta |
498995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 493010 - 493208
Alignment:
| Q |
25 |
gaaaaccatacaagcagtagtttagtatgcgttaca-----acaaagacaagttgaaatttgcaacactaaagtataagtgattgtctataaactagttt |
119 |
Q |
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| T |
493010 |
gaaaaccatgcaagcaatagtttattatgtgttacatagtaacatagacaaattgaaatttgcaacactgaagtataagtggttgtctataaactagttt |
493109 |
T |
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| Q |
120 |
tgaatttttaacactgcactatttgtcacgatatggatcaagtttgttgtgctatgcacgacactt----agattatctgagcacagatgtttataact |
214 |
Q |
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| T |
493110 |
ggaatttttaacaatgcgctattcgtcatgatttggatcaactttgttgtgttacacgcttcacttaatcagattatcagagcacagatgtttataact |
493208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 19119011 - 19118896
Alignment:
| Q |
102 |
ttgtctataaactagttttgaatttttaacactgcactatttgtcacgatatggatcaagtttgttgtgctatgcacgacactt----agattatctgag |
197 |
Q |
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||||||| |||||||||| |||||||| |||||||||||||||| ||| | ||| || || ||||| ||||||| | |||| |||||||| ||| |
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| T |
19119011 |
ttgtctacaaactagtttggaatttttgcaactgcactatttgtcatgatctagattaacttggttgttttatgcacaatacttaatcagattatcagag |
19118912 |
T |
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| Q |
198 |
cacagatgtttataac |
213 |
Q |
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| T |
19118911 |
cacagatgtttataac |
19118896 |
T |
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