View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_low_14 (Length: 231)
Name: NF7301_low_14
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_low_14 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 498569 - 498797
Alignment:
| Q |
1 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgcaaggttattttcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
498569 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgcaaggttattttcttc |
498668 |
T |
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| Q |
101 |
gtccattgaatacatttctaatattttatctcttttcttaattcggattctgaaatttttcagttcccatcaatttattatagagtttatcataaccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
498669 |
gtccattgaatacatttctaatattttatctcttttcttaattcggattctgaaatttttcagttcccatcaatttat--tagagtttatcataaccttc |
498766 |
T |
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| Q |
201 |
aaaatatcttaagcttttcaacttatgctta |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
498767 |
aaaatatcttaagcttttcaacttatgctta |
498797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8221906 - 8222021
Alignment:
| Q |
1 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgcaaggttattttcttc |
100 |
Q |
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|||||||||||||||||| | | |||||||||| | ||| ||||||||||||||| | | ||| ||| |||||| ||| |||| || | || |||||| |
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| T |
8221906 |
aaccattatgattaggcaaataaagagttttcttcttctacgaggagattggctctgagctagattgagattcattcttttctacacattgatcttcttc |
8222005 |
T |
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| Q |
101 |
gtccattgaatacatt |
116 |
Q |
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|| |||||||||||| |
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| T |
8222006 |
atctattgaatacatt |
8222021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 492946 - 492978
Alignment:
| Q |
199 |
tcaaaatatcttaagcttttcaacttatgctta |
231 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
492946 |
tcaaaatatcttaggcttttcaacttatgctta |
492978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 19002695 - 19002604
Alignment:
| Q |
69 |
gattcactctcttctgcaaggttattttcttcgtccattgaat-acatttctaatattttatctcttttcttaattcggattctgaaattttt |
160 |
Q |
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||||||||||||||| |||| | ||||||||| |||||||||| | |||||| || ||||||||||| || ||||||||| |||||||||| |
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| T |
19002695 |
gattcactctcttctacaagttcattttcttcatccattgaataagttttctacta-tttatctctttgattgattcggattttgaaattttt |
19002604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34084153 - 34084236
Alignment:
| Q |
1 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggct-cggggatagtttgggattcactctcttct |
83 |
Q |
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|||||||||| ||||||| ||||| |||||||||||||| ||||| |||||| | ||| ||| ||||||||||||| ||||| |
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| T |
34084153 |
aaccattatggttaggcagagagaaagttttctccatctatgaggaacttggctcctggggtagattgggattcactcccttct |
34084236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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