View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_low_3 (Length: 498)
Name: NF7301_low_3
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_low_3 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 3 - 478
Target Start/End: Original strand, 21541197 - 21541672
Alignment:
| Q |
3 |
ggcgaaggagaatctggaatgtcgaatattttgattggaccatttgcatctcttattggaatcaaaacaaccgtctgaggaaaaactgatgacaagggtt |
102 |
Q |
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| T |
21541197 |
ggcgaaggagaatctggaatgtcgaatattttgattggaccatttgcatctcttattggaatcaaaacaaccgtctgaggaaaaactgatgacaagggtt |
21541296 |
T |
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| Q |
103 |
gcaattgatttgcttccaagaaatcatcaagtgagataccaaattttttactcaatttatcaaaattatctccttgtataagagggtatgtaacaaagta |
202 |
Q |
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| T |
21541297 |
gcaattgatttgcttccaagaaatcatcaagtgagataccaaattttttactcaatttatcaaaattatctccttgtataagagggtatgtaacaaagta |
21541396 |
T |
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| Q |
203 |
ctttattacacctttcataatactagagtaattttttggacatgaacatctaagaggtacatgaagaacatcaccaaatttcggttcattaccttgattt |
302 |
Q |
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| T |
21541397 |
ctttattacacctttcataatactagagtaattttttggacatgaacatctaagaggtacatgaataacatcaccgaatttcggttcattaccttgattt |
21541496 |
T |
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| Q |
303 |
tcgttttgatcggaaagtgtgacatgtttcaatagaccttcaaaaacctcacaagcaatatttgaaaatgttgttgagctttcaagatttttgtagctga |
402 |
Q |
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| T |
21541497 |
tcgttttgatcggaaagtgtgacatgtttcaatagaccttcaaaaacctcacaagcaatattggaaaatgttgttgagctttcaagatttttgtagctga |
21541596 |
T |
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| Q |
403 |
gtttggcttggtaaaattggttagaacatgtacattcaataggaataagaacttctttaccttgtttgagtatttg |
478 |
Q |
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| T |
21541597 |
gtttggcttggtaaaattggttagaacatgtacattcaataggaataagaacttctttaccttgtttgagtatttg |
21541672 |
T |
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Back To:
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Target: scaffold0219 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 9545 - 9438
Alignment:
| Q |
373 |
ttgttgagctttcaagatttttgtagctgagtttggcttggtaaaattggttagaacatgtacattcaataggaataagaacttctttaccttgtttgag |
472 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9545 |
ttgttgtgctttcaagaactttgtagctgagtttggcttggtaaaattggttagaacatgtacattcaataggaataagaacttctttaccttgtttgag |
9446 |
T |
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| Q |
473 |
tatttgag |
480 |
Q |
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|||||||| |
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| T |
9445 |
tatttgag |
9438 |
T |
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