View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_low_4 (Length: 422)
Name: NF7301_low_4
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 404
Target Start/End: Original strand, 33428351 - 33428753
Alignment:
| Q |
6 |
gtttggagttgtcatggcaaccatggttgcagttgcagtcatctttgcatgacttaggaagctttatattgtttttaatacaagagtttgtgttaacctc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428351 |
gtttggagttgtcatggcaaccatggttgcaattgcagtcatctttgcatgacttaggaagctttatattgtttttaatacaagagtttgtgttaacctc |
33428450 |
T |
|
| Q |
106 |
ttggcaannnnnnnaattaatgatgtttctttattttaatgatattgtaattagatcttcaattttatatttccttatgctttaacttgttcttgannnn |
205 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428451 |
ttggcaatttttttaattaatgatgtttctttattttaatgatattgtaattagatcttcaattttatatttccttatgctttaacttgttcttgatttt |
33428550 |
T |
|
| Q |
206 |
nnnnatttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaacac----at |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33428551 |
ttttatttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaacacttatat |
33428650 |
T |
|
| Q |
302 |
ctcagcaattcaagttaggtgtaaacaagtatgcaatattgagaccttatagccgtaatttctaagattgtttatgaatcaagagaatgaaataattcaa |
401 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428651 |
ctcagcaattcaagttaggtgtaaacaagtatgcaatattgagaccttatagccgtaatttctaagattgtttatgaatcaagagaatgaaataattcaa |
33428750 |
T |
|
| Q |
402 |
gag |
404 |
Q |
| |
|
||| |
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|
| T |
33428751 |
gag |
33428753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 33416185 - 33416075
Alignment:
| Q |
6 |
gtttggagttgtcatggcaaccatggttgcagttgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaa |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||| |
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| T |
33416185 |
gtttggagttgtcatggcaatcatggttgcaattgcagtcatctttgcatgagagacttaggaagttttatattgttattaatacagaagtttgtgttaa |
33416086 |
T |
|
| Q |
102 |
cctcttggcaa |
112 |
Q |
| |
|
||||||||||| |
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|
| T |
33416085 |
cctcttggcaa |
33416075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 33410336 - 33410226
Alignment:
| Q |
6 |
gtttggagttgtcatggcaaccatggttgcagttgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaa |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
33410336 |
gtttggagttgtcatggcaatcatggttgcaattgcagtcatctttgcatgagagacttaggaagctttatattgttattaatacaagtatttgtgttaa |
33410237 |
T |
|
| Q |
102 |
cctcttggcaa |
112 |
Q |
| |
|
|| ||||||| |
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|
| T |
33410236 |
tcttttggcaa |
33410226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 33424238 - 33424128
Alignment:
| Q |
6 |
gtttggagttgtcatggcaaccatggttgcagttgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaa |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
33424238 |
gtttggagttgtcatggcaatcatggttgcaattgcagtcatctttgcatgagagacttaggaagctttatattgttattaatacaagtatttgtgttaa |
33424139 |
T |
|
| Q |
102 |
cctcttggcaa |
112 |
Q |
| |
|
|| ||||||| |
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|
| T |
33424138 |
tcttttggcaa |
33424128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 384
Target Start/End: Complemental strand, 33415067 - 33415036
Alignment:
| Q |
353 |
gccgtaatttctaagattgtttatgaatcaag |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
33415067 |
gccgtaatttctaagattgtttatgaatcaag |
33415036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 17790880 - 17791007
Alignment:
| Q |
210 |
atttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaac----acatctca |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||| |
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| T |
17790880 |
atttgaaaattttgcatctgtcacaagagttgtacttcaaaaaggtccttgacaggtttggaatgttaaattcgaaacttgtaacaacgcttatatctca |
17790979 |
T |
|
| Q |
306 |
gcaattcaagttaggtgtaaacaagtat |
333 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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| T |
17790980 |
gcaattgaagttaggtgtaaacaagtat |
17791007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 337
Target Start/End: Original strand, 33416432 - 33416528
Alignment:
| Q |
245 |
ttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaacac----atctcagcaattcaagttaggtgtaaacaagtatgcaa |
337 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||| |||||| || ||||||||| ||||||| ||||||||||||||||| |
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|
| T |
33416432 |
ttcaaaaaggtccttgacaggtttgtaatgttaaatacaaaacttgtaacaacacttatatgtcagcaattgaagttagttgtaaacaagtatgcaa |
33416528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 27529475 - 27529581
Alignment:
| Q |
233 |
caagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaac----acatctcagcaattcaagt--taggtgtaaa |
326 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| | |||||||||||| |||| |||||||||| |
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| T |
27529475 |
caagagttgcacttcaaaaaggtccttgacaggtttgaaatgttaaattcaaaacttgtaacaacgcttatatctcagcaattgaagttataggtgtaaa |
27529574 |
T |
|
| Q |
327 |
caagtat |
333 |
Q |
| |
|
||||||| |
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|
| T |
27529575 |
caagtat |
27529581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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