View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7301_low_5 (Length: 417)

Name: NF7301_low_5
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7301_low_5
NF7301_low_5
[»] chr4 (23 HSPs)
chr4 (3-399)||(4303436-4303832)
chr4 (7-399)||(15705794-15706186)
chr4 (3-399)||(22340171-22340567)
chr4 (3-399)||(17838768-17839170)
chr4 (3-399)||(29123673-29124068)
chr4 (35-399)||(8110542-8110906)
chr4 (88-397)||(12915468-12915777)
chr4 (168-399)||(18116616-18116848)
chr4 (168-391)||(36279445-36279668)
chr4 (168-391)||(6614276-6614499)
chr4 (168-391)||(23158392-23158615)
chr4 (123-306)||(12290504-12290687)
chr4 (168-364)||(15649336-15649532)
chr4 (88-346)||(29192602-29192860)
chr4 (168-372)||(51872442-51872646)
chr4 (168-294)||(50694093-50694219)
chr4 (168-224)||(17469533-17469589)
chr4 (168-224)||(34994483-34994539)
chr4 (168-224)||(36950958-36951014)
chr4 (88-223)||(3621246-3621381)
chr4 (108-211)||(24059340-24059443)
chr4 (255-297)||(25135122-25135164)
chr4 (258-298)||(24059490-24059530)
[»] chr3 (20 HSPs)
chr3 (3-395)||(8594849-8595241)
chr3 (3-399)||(23602855-23603251)
chr3 (3-399)||(42462312-42462708)
chr3 (88-399)||(48547231-48547542)
chr3 (3-263)||(8542098-8542357)
chr3 (46-391)||(23571863-23572208)
chr3 (104-397)||(42459528-42459820)
chr3 (105-400)||(30737183-30737477)
chr3 (168-368)||(53152350-53152550)
chr3 (168-391)||(3514441-3514664)
chr3 (169-306)||(32945649-32945786)
chr3 (168-391)||(17154049-17154272)
chr3 (3-154)||(26130487-26130637)
chr3 (88-224)||(39633241-39633377)
chr3 (116-224)||(52195992-52196100)
chr3 (168-224)||(16663733-16663789)
chr3 (91-211)||(28393199-28393319)
chr3 (231-372)||(9818880-9819021)
chr3 (258-298)||(28393365-28393405)
chr3 (168-297)||(10753820-10753949)
[»] chr1 (9 HSPs)
chr1 (1-399)||(49369363-49369755)
chr1 (35-399)||(5556891-5557255)
chr1 (168-399)||(41343042-41343273)
chr1 (104-397)||(45757377-45757669)
chr1 (88-297)||(37666030-37666239)
chr1 (231-391)||(27029772-27029932)
chr1 (101-159)||(4161989-4162047)
chr1 (231-391)||(10003751-10003911)
chr1 (3-265)||(48759786-48760048)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-399)||(58630-59026)
[»] chr6 (9 HSPs)
chr6 (28-399)||(666881-667250)
chr6 (88-399)||(28605121-28605432)
chr6 (100-297)||(17227617-17227814)
chr6 (88-325)||(7218658-7218895)
chr6 (35-372)||(18295657-18295995)
chr6 (108-297)||(14223505-14223694)
chr6 (168-224)||(5391926-5391982)
chr6 (168-277)||(9759859-9759968)
chr6 (233-297)||(23659877-23659941)
[»] scaffold0041 (1 HSPs)
scaffold0041 (3-399)||(73890-74286)
[»] chr7 (25 HSPs)
chr7 (3-399)||(40891998-40892394)
chr7 (3-308)||(21607830-21608135)
chr7 (168-399)||(586541-586772)
chr7 (168-391)||(9403367-9403590)
chr7 (88-399)||(20705726-20706037)
chr7 (88-399)||(20873770-20874081)
chr7 (159-400)||(27278350-27278591)
chr7 (168-368)||(37075855-37076055)
chr7 (168-364)||(34981604-34981800)
chr7 (168-294)||(22866087-22866213)
chr7 (168-368)||(12121343-12121543)
chr7 (99-211)||(18815815-18815927)
chr7 (107-399)||(5196329-5196621)
chr7 (231-391)||(24819517-24819677)
chr7 (231-391)||(36575624-36575784)
chr7 (168-261)||(3483065-3483158)
chr7 (168-224)||(45649570-45649626)
chr7 (108-211)||(14769686-14769788)
chr7 (108-211)||(15220137-15220239)
chr7 (231-306)||(31253038-31253113)
chr7 (258-296)||(8457521-8457559)
chr7 (316-397)||(27868805-27868886)
chr7 (255-295)||(1760826-1760866)
chr7 (258-298)||(18815728-18815768)
chr7 (168-224)||(27868667-27868723)
[»] chr2 (10 HSPs)
chr2 (132-399)||(38938193-38938460)
chr2 (168-391)||(21963165-21963388)
chr2 (168-391)||(27914843-27915066)
chr2 (168-391)||(23384600-23384823)
chr2 (88-347)||(33937063-33937320)
chr2 (231-388)||(32349694-32349851)
chr2 (3-149)||(20534376-20534523)
chr2 (75-400)||(22298576-22298901)
chr2 (231-391)||(30275710-30275869)
chr2 (258-298)||(20007345-20007385)
[»] chr8 (8 HSPs)
chr8 (3-399)||(31423449-31423845)
chr8 (107-400)||(26390474-26390767)
chr8 (168-391)||(26077968-26078191)
chr8 (107-368)||(29529870-29530130)
chr8 (168-364)||(2959859-2960055)
chr8 (27-149)||(13099552-13099673)
chr8 (237-295)||(18182108-18182166)
chr8 (88-149)||(9098333-9098393)
[»] chr5 (12 HSPs)
chr5 (3-399)||(11265617-11266013)
chr5 (35-399)||(27891322-27891686)
chr5 (168-391)||(5825211-5825434)
chr5 (168-391)||(10462379-10462602)
chr5 (104-387)||(29149998-29150281)
chr5 (168-306)||(6678903-6679041)
chr5 (88-347)||(38931446-38931705)
chr5 (28-145)||(25907386-25907503)
chr5 (168-397)||(31962908-31963137)
chr5 (168-347)||(8895141-8895320)
chr5 (168-224)||(29322550-29322606)
chr5 (260-295)||(16862796-16862831)
[»] scaffold0003 (1 HSPs)
scaffold0003 (88-325)||(225032-225269)
[»] scaffold0289 (1 HSPs)
scaffold0289 (258-400)||(10912-11054)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 3 - 399
Target Start/End: Complemental strand, 4303832 - 4303436
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    ||||||||| | || ||||||||| |||||  ||||| ||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  4303832 aagcacaagatttgccaaaagaaactgaaataagttagttacagtacagtaaggctagaaaagccaggaaacaaaaacaaaaacagacattacaaggcag 4303733  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  4303732 cctgtaaacaacaaaatggattttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatccaccaaaaggtttgaagtttaaccct 4303633  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  4303632 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaatcgaaatccaaacaatagacaaa 4303533  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303532 gctttcgtagaactctttgaaaaacctccaagggcacaaaattgattagcatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 4303436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 15706186 - 15705794
Alignment:
Q  7 acaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcagcctg 106  Q
    |||||||||| |||||| || |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||    
T  15706186 acaaggtgtgccaaaaggaactgaaaatagttagttacaatacagtaaggctataaaagccaggaaacaaaaacaaaaacagacattacaaggcagcctg 15706087  T
Q  107 taaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttca 206  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15706086 taaacaacaaaatggattttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatccaccaaaaggtttgaagtttaaccctttca 15705987  T
Q  207 agaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  15705986 agaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataataaataaaaccgaaatccaaacaatagataaagctt 15705887  T
Q  307 tcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  15705886 tcgtagaactctttgaaaaatctccaagggcacaaaattggttagcatgggtatataaattgccatgaagcaccgtaacaaaaccaagtcaat 15705794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 22340171 - 22340567
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||||||||||||||||  | |||||| ||||| ||||||||||| |||||||||| |||||  |||||||||||| | |  |||||||| |||||    
T  22340171 aagcacaaggtgtgtcaaaagggactgaaaacagttagttacaatacagtaaggctagaacagccaaaaaacaaaaacaacaacatacattacatggcag 22340270  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||| ||||||| |    
T  22340271 tctgtaaacaacataaaggattttgtctccaaaagggataatcaaaactgaatgtgatgaagtttgctttcatccaccaaaaagtttgaagtttaacctt 22340370  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  22340371 ttcaagaagagcttcaagatgatccatattgttttggaaaatcttcaaattgcgatctttccatataacaaataaaaccaaaatccaaataatagacaaa 22340470  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| || || ||||||||||||||||||| |||||||| || ||| |||| | ||||||||||||||||||||||||||||||||||| |||||    
T  22340471 gctttcatagaattctttgaaaaacctccaagagcacaaaactgattagcatgaggatataaattgccatgaaacaccgtaacaaaaccaaaccaat 22340567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 399
Target Start/End: Complemental strand, 17839170 - 17838768
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagcc------gacattaca 96  Q
    |||||||||||||| |||| | |  |||||||||||||||||||||||| |||||||||| |||||  |||||||||||||| |       |||||||||    
T  17839170 aagcacaaggtgtgacaaagggagctgaaaatagttaattacaatacagtaaggctagaacagccataaaacaaaaacaaaaacaaaaacagacattaca 17839071  T
Q  97 aggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaattt 196  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||||||| ||||  | ||||||| |||||||||||||||||| ||||||| |||    
T  17839070 aggcagtctgtaaacaacataagggattttgtctccaaaagggataatcaaaagtgaacatgatgaagtttgctttcatccaccaaaaagtttgaagttt 17838971  T
Q  197 aaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataata 296  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  17838970 aaccctttcaagaagagcttcaagatgatccatatggttttggaaaatcttcatgttgcgatctttccaaataacaaataaaaccaaaatccaaataata 17838871  T
Q  297 gacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagcc 396  Q
    |||||||||||| |  || |||||||||| || ||||| |||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||| |    
T  17838870 gacaaagctttcatggaattctttgaaaagcccccaagagcacaaaactgattagcatgtgtatataaattgccatgaaacaccgtaacaaaaccaagtc 17838771  T
Q  397 aat 399  Q
    |||    
T  17838770 aat 17838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 399
Target Start/End: Complemental strand, 29124068 - 29123673
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    ||||| |||||||| |||||| || |||||| ||||| ||||||||||| |||||||||  |||||  ||||||||| || | | ||||||||||||||     
T  29124068 aagcataaggtgtgccaaaaggaactgaaaacagttagttacaatacagtaaggctagagcagccaaaaaacaaaaagaacatcagacattacaaggcaa 29123969  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     ||| |||||||||||| ||||||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||||||| ||||||| ||||||| |    
T  29123968 tctgcaaacaacataaaggattttgtctccaaaagggataatcaaaactgaaagtgatggagtttgctttcatccaccaaaaagtttgaagtttaacctt 29123869  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29123868 ttcaagaagagcttcaagatgatccatattgttttggaaaatcctcaaattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 29123769  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| || || |||||| |||||||||||| |||||||| || ||| |||| | |||||||||||| ||||||||||||||||||||||||||||    
T  29123768 gctttcatagaattctttg-aaaacctccaagagcacaaaactgattagcatgaggatataaattgccttgaaacaccgtaacaaaaccaagccaat 29123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 35 - 399
Target Start/End: Original strand, 8110542 - 8110906
Alignment:
Q  35 agttaattacaatacagaaaggctagaaa-agccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttgtctcca 133  Q
    |||||||||||| |||  ||||||| ||| |||||  || |||||| |||| | |||||||||   ||| ||||||||||  |||| |||||||||||||    
T  8110542 agttaattacaacacatcaaggctaaaaacagccataaatcaaaaataaaa-cagacattacacaacagtctgtaaacaatgtaaaggattttgtctcca 8110640  T
Q  134 aaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatgg 233  Q
    ||||||||||||||||  ||| || ||||||| |||||||| ||||||| | || |||| |||||||||||||| ||||||||| |||||  | |  |||    
T  8110641 aaagggataatcaaaagcgaaagtgatgaagtctgctttcagccaccaataagtctgaagtttaaccctttcaaaaagagcttcgagatgttcaacttgg 8110740  T
Q  234 ttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaa 333  Q
    || || |||||| || | ||||| || ||||||||||||||||| ||||||||||| |||||||  |||||| || || || ||||||| || |||||||    
T  8110741 ttctgaaaaatcctcctgttgcggtccttccaaataacaaataagaccgaaatccatataatagtaaaagctgtcctagaattctttgagaaccctccaa 8110840  T
Q  334 gggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    | |||||||| || ||| |||| | | ||| |||||||||||||||| |||||| ||||| |||||    
T  8110841 gagcacaaaactgattagcatgtgaaaatatattgccatgaaacaccttaacaataccaaaccaat 8110906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 88 - 397
Target Start/End: Original strand, 12915468 - 12915777
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||| | |||  ||||||||||| ||| ||||||||||||||||| |||| ||||||  |||||||||||||| |||||||| ||||||| | ||    
T  12915468 gacattacatgacagtttgtaaacaacaaaaaggattttgtctccaaaagtgatagtcaaaaacgaatgtaatgaagtttgctttcaaccaccaatacgt 12915567  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||||| |||||||||||| | ||||||||| |||||| | |  || |||||||||||  || | |||||||||||||| |||||| |||| |||||||||    
T  12915568 ttgaagtttaaccctttccataagagcttctagatgatcaaagtgattttggaaaattctcctgttgcgatctttccatataacatataagaccgaaatc 12915667  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaa 387  Q
     |||||||||  || |||  |||| | ||| |||| || || || || |||||||| || ||| |||| |||| |||||| ||||| || ||||||||||    
T  12915668 taaataatagtaaacgctaacgtagacctccttgagaagccaccgagagcacaaaaatgattagcatgagtatgtaaattaccatgtaaaaccgtaacaa 12915767  T
Q  388 aaccaagcca 397  Q
     |||||||||    
T  12915768 taccaagcca 12915777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 168 - 399
Target Start/End: Complemental strand, 18116848 - 18116616
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggtttt-ggaaaatcttcatattgcgatctttccaa 266  Q
    ||||||| ||||||||| ||||||| ||| ||||||||||| | | |||| | |||| | || ||||||| |||||||| || ||||||||||||||||     
T  18116848 gctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggtttttggaaaatcctcctattgcgatctttccat 18116749  T
Q  267 ataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaat 366  Q
    |||  |||||| |||||||||||||||||||  || |||||| || || ||||||| || |||||||| || ||||| || ||| |||  ||||||||||    
T  18116748 atagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaactgattagcatttgtatataaat 18116649  T
Q  367 tgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| ||| ||||||||||||||||||||||    
T  18116648 tgccattaaaaaccgtaacaaaaccaagccaat 18116616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 36279668 - 36279445
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| || |||||||| ||| |||| | | || | || ||||||||||||||| || | |||||||||||||| |    
T  36279668 gctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccata 36279569  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  | |||| |||||||||||||||||||  ||||||||| ||||| ||||||| ||||||||||| || ||||| || ||| |||| |||||||||||    
T  36279568 tagtatataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaacctccaagagcgcaaaactgattagcatgagtatataaatt 36279469  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  || ||||||||||||||    
T  36279468 gccattgaaaaccgtaacaaaacc 36279445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 6614499 - 6614276
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||| |||| | |||| | || |||||||| |||||| |||| |||||||||||||| |    
T  6614499 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcatgttgcgatctttccata 6614400  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| || ||||||  | || ||||||| ||||||||||| |||||||| || ||  |||| | |||||||||    
T  6614399 tagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactgatttgcatgtgaatataaatt 6614300  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  6614299 gccattgagaaccgtaacaaaacc 6614276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 23158615 - 23158392
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||||||| || |||||||| ||| |||| | | || | || ||||||||||||||| || | ||||||||||| || |    
T  23158615 gctttcaaccaccaaaacgtttgaaatttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctgttgcgatcttttcata 23158516  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  | |||| |||||||||||||||||||  ||||||||| || || ||||||| ||||||||||| || ||||| || ||| |||| |||||||||||    
T  23158515 tagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacctccaagagcgcaaaactgattagcatgagtatataaatt 23158416  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  23158415 gccattgagaaccgtaacaaaacc 23158392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 123 - 306
Target Start/End: Original strand, 12290504 - 12290687
Alignment:
Q  123 ttttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagat 222  Q
    |||||||||||||||| ||| |||||| ||||  | ||||||| |||||||| ||||||| | || |||| ||||||||||||   ||||||||| ||||    
T  12290504 ttttgtctccaaaaggaatagtcaaaagtgaacatgatgaagtttgctttcaaccaccaataagtctgaagtttaaccctttccgaaagagcttcgagat 12290603  T
Q  223 gacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    |  |  | ||||| || |||||| |  |||| ||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  12290604 gttcactttggttctgaaaaatccttctatttcgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctt 12290687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 364
Target Start/End: Complemental strand, 15649532 - 15649336
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| ||||||||||||||| |||| | |||| | || | |||||| |||||| || | || |||||||||||||    
T  15649532 gctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctgttacgatctttccaaa 15649433  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataa 364  Q
    ||  |||||| |||||||||||||||||||| |||| || | || ||  |||||| || |||||||| |||||||| || ||| |||| | ||||||    
T  15649432 tagaaaataagaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataa 15649336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 88 - 346
Target Start/End: Complemental strand, 29192860 - 29192602
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    |||||||||| |||| ||||||||||  |||| ||||||  |||||| ||||||| ||||||| |||  | ||| | |  ||||||| ||||||||| ||    
T  29192860 gacattacaaagcagtctgtaaacaaagtaaaggatttttcctccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaaaacgt 29192761  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||| | ||||||||||||||| ||||||||||||| | | | ||| |  || |||||  || | || | ||||||| |||| || |||||||||||||||    
T  29192760 ttggagtttaaccctttcaagtagagcttcaagataatcaaaatgatgctgaaaaattctcctgtttctatctttctaaatgacgaataaaaccgaaatc 29192661  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattg 346  Q
    ||||||||||  ||| || || || |  | ||||||||||| ||||| |||||||||||    
T  29192660 caaataatagtaaaacctgtcatagagttttttgaaaaacccccaagagcacaaaattg 29192602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 372
Target Start/End: Original strand, 51872442 - 51872646
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| || |||||||| ||| | || | | || | || ||||||||||||||| || | ||||||| ||||||||    
T  51872442 gctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaatcctcctgttgcgatttttccaaa 51872541  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  | ||||  |||| |||||||||||||  ||||||||| || || ||||||| |||||||| ||  ||||||| || ||| |||| |||||| ||||    
T  51872542 tagtatataaggccgatatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagaccacaaaactgattagcatgagtatatgaatt 51872641  T
Q  368 gccat 372  Q
    |||||    
T  51872642 gccat 51872646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 50694219 - 50694093
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |  || || || |||||  || | || | |||||||||||    
T  50694219 gctttcagccaccaaaacgtttgaagtttaaccctttcaagaagaacttcaagatgatcaaagtgattctgaaaaattctcctgtttctatctttccaaa 50694120  T
Q  268 taacaaataaaaccgaaatccaaataa 294  Q
    | || ||||||||||||||||||||||    
T  50694119 tgacgaataaaaccgaaatccaaataa 50694093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 17469589 - 17469533
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  17469589 gctttcagccaccaaaatgtttgaagtttaatcctttcaagaagagcttcaagatga 17469533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 34994483 - 34994539
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  34994483 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 34994539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 36950958 - 36951014
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  36950958 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 36951014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 3621246 - 3621381
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||| | ||| ||||||||||  |||| | |||||||||||||| | ||| ||||||  |||  | |  |||| |||||||| ||||||| | ||    
T  3621246 gacattacatgacagtctgtaaacaatgtaaatggttttgtctccaaaaagaatagtcaaaagcgaacatgacaaagtttgctttcaaccaccaataagt 3621345  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatg 223  Q
     |||| |||||||||||||| |||||||||||||||    
T  3621346 ctgaagtttaaccctttcaaaaagagcttcaagatg 3621381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 24059340 - 24059443
Alignment:
Q  108 aaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaa 207  Q
    |||||||||||| ||||||| || |||||||| || ||||| | ||| |||||| |||  ||||||| ||||||| | ||||| | ||||||| ||||||    
T  24059340 aaacaacataaaggattttgccttcaaaaggggtagtcaaagtcgaacgtaatgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaa 24059439  T
Q  208 gaag 211  Q
    ||||    
T  24059440 gaag 24059443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 25135122 - 25135164
Alignment:
Q  255 cgatctttccaaataacaaataaaaccgaaatccaaataatag 297  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  25135122 cgatctttccaaataacaaataagactgaaatccaaataatag 25135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 24059490 - 24059530
Alignment:
Q  258 tctttccaaataacaaataaaaccgaaatccaaataataga 298  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  24059490 tcttttcagataacaaataagaccgaaatccaaataataga 24059530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 395
Target Start/End: Original strand, 8594849 - 8595241
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    ||||||||||||||||||||||   | |||||||||| ||||||||||  | | ||| || ||||||||||||||||||||| | |||||||||||||||    
T  8594849 aagcacaaggtgtgtcaaaagagcctaaaaatagttagttacaatacaataggtctaaaagagccaggaaacaaaaacaaaaacagacattacaaggcag 8594948  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |    
T  8594949 cctgtatacaacaaaaaggattttgtctccaaaagggataatcaaaattgaacgtaatgaagtgtgctttcatccaccaaaaggtttgaagtttaacctt 8595048  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8595049 ttcaagaagagcttcaagataacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaacaatagacaaa 8595148  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagc 395  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  8595149 gctttcgtagaactctttgaaaaacatccaagggcacaaaattggttagcatgggtatgtaaattgacatgaaacaccgtaacaaaaccaagc 8595241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 23602855 - 23603251
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||||||||| ||||||  | |||||| ||||| ||||||||| ||||||||| ||  ||||  |||||||||||  | | |||||||||   |||    
T  23602855 aagcacaaggtgtgccaaaagggactgaaaacagttagttacaatacggaaaggctaaaactgccaaaaaacaaaaacatcaacagacattacataacag 23602954  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||||||||||||||| ||||||| |    
T  23602955 tctgtaaacaacataaaggattttgtctccaaaagggataatcaaaactgaaggtgatggagtttgctttcatccaccaaaaggtttgaagtttaacctt 23603054  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  23603055 ttcaagaagagcttcaagatgatccatattgttttggaaaatcttcaagttgcgatctttccaaataacaaataaaatcgaaatccaaataatagacaga 23603154  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| || || |||||||||| |||||||| |||||||| ||  || |||| | |||||||||||||||||||||||||||||||||||||||||    
T  23603155 gctttcatagaattctttgaaaatcctccaagagcacaaaactgaatagcatgaggatataaattgccatgaaacaccgtaacaaaaccaagccaat 23603251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 42462312 - 42462708
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    ||||| |||||||| |||  ||| ||||||| ||||||||||||||||| |||| || || |||||  || ||||||||||| | ||||||||||| |||    
T  42462312 aagcataaggtgtgccaacggaagttgaaaagagttaattacaatacagtaaggttaaaatagccataaatcaaaaacaaaaacagacattacaagacag 42462411  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     || |||||||||||| |||||||||||||||| |||||||||||||  |||  | |||||||  ||||||| ||||||||| ||||||| |||||||||    
T  42462412 tctataaacaacataagagattttgtctccaaatgggataatcaaaagcgaacatgatgaagttagctttcaaccaccaaaaagtttgaagtttaaccct 42462511  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    ||||||||||||||||||||||  | ||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||  |||    
T  42462512 ttcaagaagagcttcaagatgattcgtatggttttggaaaatcctcatgttgcgatcttttcaaataacaaataagaccgaaatccaaataatagtaaaa 42462611  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
     ||||| ||||| |||||||||| |||||||| |||||||| || ||| |||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  42462612 cctttcatataattctttgaaaagcctccaagagcacaaaactgattagcatgtgtatataaattgccatgaaacatcgtaacaaaaccaagtcaat 42462708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 88 - 399
Target Start/End: Original strand, 48547231 - 48547542
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||| | ||| ||||||||||  |||  |||||||||||||||| ||||||||||||  ||| || ||||||| |||||||| ||||||| | ||    
T  48547231 gacattacatgacagtctgtaaacaatgtaacggattttgtctccaaaaaggataatcaaaagcgaacgtgatgaagtttgctttcaaccaccaataagt 48547330  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||||| |||||||||||||| ||||||||| |||||  | || ||||| || |||||| || | |||||||||||||||||||||||||| |||||||||    
T  48547331 ttgaagtttaaccctttcaaaaagagcttcgagatgttcaatttggttctgaaaaatcctcctgttgcgatctttccaaataacaaataagaccgaaatc 48547430  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaa 387  Q
    || |||||||  |||| | || || |  ||||||| ||||||||||| |||||||| || ||| |||| | |  ||||||||| ||| ||||||||||||    
T  48547431 catataatagtaaaagttgtcctagacttctttgagaaacctccaagagcacaaaactgattagcatgtgaaattaaattgccttgagacaccgtaacaa 48547530  T
Q  388 aaccaagccaat 399  Q
     ||||| |||||    
T  48547531 taccaaaccaat 48547542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 8542098 - 8542357
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    ||||||||||||||||||| | |  |||||| ||||||||||| ||||| ||||||| || |||||  || ||||||| ||| | ||  ||||||| |||    
T  8542098 aagcacaaggtgtgtcaaagggagctgaaaagagttaattacattacagtaaggctaaaacagccataaatcaaaaaccaaaacagaatttacaag-cag 8542196  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||  |||||||| |||||||||||||||| |||  ||| || ||| |||  ||||||| ||||||||| ||| ||| |||||||||    
T  8542197 tctgtaaacaacataagggattttgtgtccaaaagggataatcgaaagcgaacgtgatgtagttagctttcaaccaccaaaacgttcgaagtttaaccct 8542296  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttc 263  Q
    ||||||||||||||| |||||| | || ||||||||||||||| || | || |||||||||    
T  8542297 ttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctgttacgatctttc 8542357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 46 - 391
Target Start/End: Complemental strand, 23572208 - 23571863
Alignment:
Q  46 atacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatc 145  Q
    |||||| ||||||| |  |||||  |||||||||| |||   ||| ||||||  ||| |||||||||||||||  | |||||||||||| | |||||||     
T  23572208 atacagtaaggctaaagcagccacaaaacaaaaaccaaaagagactttacaaaacagtctgtaaacaacataaggggttttgtctccaataaggataata 23572109  T
Q  146 aaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatc 245  Q
    ||||  |||    ||| |||  ||||||| ||||||||| ||||||| ||| ||||||||||  ||| |||| | |||| | || |||||||||||||||    
T  23572108 aaaaacgaacaagatgcagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaattagaacttccaaatgaacaatttggttttggaaaatc 23572009  T
Q  246 ttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaatt 345  Q
     || | |||||||||||||| |||  |||||| |||||||||||||||||||  || |||||| || || ||||||| || |||||||  |||||||| |    
T  23572008 ctcctgttgcgatctttccatatagaaaataataccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaaaagcacaaaact 23571909  T
Q  346 ggttaacatgggtatataaattgccatgaaacaccgtaacaaaacc 391  Q
    | ||| |||| |||||||||||||||| ||| |||||| |||||||    
T  23571908 gattagcatgtgtatataaattgccattaaaaaccgtagcaaaacc 23571863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 397
Target Start/End: Complemental strand, 42459820 - 42459528
Alignment:
Q  104 ctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctt 203  Q
    |||||||||||| ||| |||||||||||||||| ||| | ||||||  ||| || || |||| |||||||| ||||||| | ||||||| ||||||||||    
T  42459820 ctgtaaacaacaaaaaggattttgtctccaaaaaggacagtcaaaaacgaacgtgataaagtttgctttcaaccaccaatacgtttgaagtttaaccctt 42459721  T
Q  204 tcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaag 303  Q
     | | |||||||||||||||| | | ||| |||| ||||||  || | |||||||||||||| |||||| |||| |||||||||||||||||||  || |    
T  42459720 accataagagcttcaagatgatcaaaatgatttt-gaaaattctcctgttgcgatctttccatataacatataagaccgaaatccaaataatagtaaacg 42459622  T
Q  304 ctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagcca 397  Q
    ||  | |||||||| |||| || || || || |||||||| || ||| |||| | || |||||| ||||| || |||||||||| |||||||||    
T  42459621 ctaacatataactccttgagaagccaccgagagcacaaaactgattagcatgagaatgtaaattaccatgtaaaaccgtaacaataccaagcca 42459528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 400
Target Start/End: Original strand, 30737183 - 30737477
Alignment:
Q  105 tgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaacccttt 204  Q
    |||||||||||| |  | |||||||| |||||||| ||||| |||| |||  | |||||||  | ||||| ||||||| | ||||||| |||||||||||    
T  30737183 tgtaaacaacatgaggggttttgtcttcaaaaggg-taatctaaatcgaacctgatgaagttcgatttcaaccaccaatacgtttgaagtttaacccttt 30737281  T
Q  205 caagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagc 304  Q
    |||||||||||||||||||| | || || |||||||||||  || | ||||||||||| || ||||||||||| ||||||||||| |||||||  ||||     
T  30737282 caagaagagcttcaagatgatcaatgtgattttggaaaattctcctcttgcgatcttttcatataacaaataagaccgaaatccatataatagtaaaagt 30737381  T
Q  305 tttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaatg 400  Q
    | || || |  ||||||| ||||||||||| | |||||| || ||  |||| |||| ||||| |||||| || | |||||||| || |||||||||    
T  30737382 tgtcctagagttctttgagaaacctccaagagtacaaaactgattcgcatgtgtatgtaaatcgccatgtaaaatcgtaacaatactaagccaatg 30737477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 368
Target Start/End: Complemental strand, 53152550 - 53152350
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||| |||| |||||| | || |||||||| |||||| || | || |||||||||||||    
T  53152550 gctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaa 53152451  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| ||||||| |  | ||  |||||| || |||||||| |||||||| || ||| |||| | |||||||||    
T  53152450 tagtaaataagaccgaaatccaaataatagaaaaagcttgcacagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataaatt 53152351  T
Q  368 g 368  Q
    |    
T  53152350 g 53152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 391
Target Start/End: Original strand, 3514441 - 3514664
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| || |||||||| ||| | || | | || | || ||||||||||||||| || | ||||||||||||||||    
T  3514441 gctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccaaa 3514540  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  | |||| ||||| |||||||||||||  ||||||||| || || ||||||| |||||||| || || ||||| || ||| |||| |||||||||||    
T  3514541 tagtatataagaccgagatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaactgattagcatgagtatataaatt 3514640  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  3514641 gccattgagaaccgtaacaaaacc 3514664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 32945649 - 32945786
Alignment:
Q  169 ctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaat 268  Q
    |||||| ||||||||| ||||| | ||| ||||||||||||||| |||| |||||| | || |||||||| |||||| || | || ||||||||||||||    
T  32945649 ctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaat 32945748  T
Q  269 aacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    |  |||||| |||||||||||||||||||| |||||||    
T  32945749 agtaaataagaccgaaatccaaataatagaaaaagctt 32945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 17154272 - 17154049
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||| |||||||||| |||| |||| | |||| | || ||||||||||||||| || | |||| ||||||||| |    
T  17154272 gctttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctgttgcaatctttccata 17154173  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| || ||||||||||||||||  || ||||||  | || ||||||| ||||||||||| || ||||| || ||  |||| | |||||||||    
T  17154172 tagtaaataagactgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcgcaaaactgatttgcatgtgaatataaatt 17154073  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    | |||  |  ||||||||||||||    
T  17154072 gtcattgagaaccgtaacaaaacc 17154049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 26130637 - 26130487
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||||| ||| ||||||  | |||||  ||||| ||||||||||||||||||||||  ||||  |||||||| ||  | | |||||||||   |||    
T  26130637 aagcacaaggcgtgccaaaagggactgaaagcagttagttacaatacagaaaggctagaactgccaaaaaacaaaa-catcaacagacattacataacag 26130539  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaa 154  Q
     |||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  26130538 tctgtaaacaacataaaggattttgtctccaaaagggataatcaaaactgaa 26130487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 39633377 - 39633241
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    |||||||||| ||||  |||||||||  |||| ||||||| |||||| ||||||| ||||||| |||  | ||| | |  ||||||| ||||||||| ||    
T  39633377 gacattacaaagcagtttgtaaacaaagtaaaggattttgcctccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaaaacgt 39633278  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||| | ||||||||||||||| |||||||||||||||    
T  39633277 ttggagtttaaccctttcaagtagagcttcaagatga 39633241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 52195992 - 52196100
Alignment:
Q  116 taaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagct 215  Q
    ||||||||| |  |||||||| ||||| ||||||| |||  ||||| | | |||||||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  52195992 taaaagattgttcctccaaaatggatagtcaaaatcgaacataatgtaatttgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagct 52196091  T
Q  216 tcaagatga 224  Q
    |||||||||    
T  52196092 tcaagatga 52196100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 16663733 - 16663789
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  16663733 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 16663789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 28393199 - 28393319
Alignment:
Q  91 attacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttg 190  Q
    ||||||| ||||| ||  ||||||||||| ||||||||||||||| |||||| ||||| |||||||||||| |||  ||||||| ||| ||| |  ||||    
T  28393199 attacaaagcagcttgacaacaacataaaggattttgtctccaaatgggatagtcaaagttgaatgtaatgtagttcgctttcaaccatcaatatatttg 28393298  T
Q  191 aaatttaaccctttcaagaag 211  Q
     |  |||||| ||||||||||    
T  28393299 gagcttaaccttttcaagaag 28393319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 372
Target Start/End: Original strand, 9818880 - 9819021
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    |||||||| |||||| || | |||||||||| ||| |||  | |||| |||||||||||||| ||||  ||||||||| || || ||||||| ||||| |    
T  9818880 tggttttgaaaaatcctcctgttgcgatcttcccatatagtatataagaccgaaatccaaatgatagtaaaagctttcataaaattctttgagaaaccac 9818979  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccat 372  Q
    | |  || ||||| || ||| |||| | ||||||||||||||    
T  9818980 ctaaagcgcaaaactgattagcatgagaatataaattgccat 9819021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 28393365 - 28393405
Alignment:
Q  258 tctttccaaataacaaataaaaccgaaatccaaataataga 298  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  28393365 tctttccagataacaaataagaccgaaatccaaataataga 28393405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 10753820 - 10753949
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaa-tcttcatattgcgatctttccaa 266  Q
    ||||||| ||||||||| || || | ||||||||||||||||||| ||||||| ||| | |  || |  || |||| ||||| | || | ||| |||||     
T  10753820 gctttcaaccaccaaaacgtctggagtttaaccctttcaagaagaacttcaagctgatcaaattgttgctgaaaaattcttc-tgtttctatccttccat 10753918  T
Q  267 ataacaaataaaaccgaaatccaaataatag 297  Q
    || ||||||||||||||||||||||||||||    
T  10753919 atgacaaataaaaccgaaatccaaataatag 10753949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 49369363 - 49369755
Alignment:
Q  1 ttaagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggc 100  Q
    ||||||| |||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||      || ||||||||||    
T  49369363 ttaagcataaggtgtgccaaaagaaactgaaaatagttagttacaatacagtaaggctagaaaagccagaaaacaaaaaca------gagattacaaggc 49369456  T
Q  101 agcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaacc 200  Q
    || |||||||||||||||  ||||||||||||||||||||||||||||| | ||  ||||||||| |||||||||||||||||||||||||| |||||||    
T  49369457 agtctgtaaacaacataatggattttgtctccaaaagggataatcaaaagtaaacataatgaagtttgctttcatccaccaaaaggtttgaagtttaacc 49369556  T
Q  201 ctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagaca 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  49369557 ctttcaagaagagcttcaagatgacccaaatggttttggaaaatcttcatattgcaatctttccaaataacaaataaaatcgaaatccaaataatagaca 49369656  T
Q  301 aagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  49369657 aagctttcgtataattctttgaaaaacctccaagggcataaaactggttagcatgagtatataaattgtcatgaaacaccgtaacaaaaccaagccaat 49369755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 399
Target Start/End: Original strand, 5556891 - 5557255
Alignment:
Q  35 agttaattacaatacagaaaggctagaaa-agccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttgtctcca 133  Q
    ||||||||||||||||| ||||||| ||| | |||  || ||||||||||| | |||||||||   ||| ||||||||||  |||  |||||||||||||    
T  5556891 agttaattacaatacagcaaggctaaaaacaaccataaaccaaaaacaaaa-cagacattacattacagtctgtaaacaatgtaacggattttgtctcca 5556989  T
Q  134 aaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatgg 233  Q
    ||||||||| ||||||  ||| || ||||||| |||||||| ||||||  | ||||||| |||||||||||||| ||||||||| |||||| | || |||    
T  5556990 aaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccaccagtaagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttgg 5557089  T
Q  234 ttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaa 333  Q
    | ||| |||||| || | |||||||||||||||| ||||||||| ||||||||||| |||||||  |||| | ||  | || ||||||| ||| ||||||    
T  5557090 tattgaaaaatcctcctgttgcgatctttccaaacaacaaataagaccgaaatccatataatagtaaaagttatccaagaattctttgagaaagctccaa 5557189  T
Q  334 gggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    | |||||||| || ||| |||| | |  ||||||  | |||||||||||||||| ||||| |||||    
T  5557190 gagcacaaaactgattagcatgtgaaattaaattatcttgaaacaccgtaacaataccaaaccaat 5557255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 399
Target Start/End: Complemental strand, 41343273 - 41343042
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| ||||||||||| | | |||| | |||| | || ||||||||||||||| || |||||||||||||||| |    
T  41343273 gctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggttttggaaaatcctcctattgcgatctttccata 41343174  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||  || |||||| || || ||||||| || |||||||| || ||||| || ||| |||  |||||||||||    
T  41343173 tagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaactgattagcatttgtatataaatt 41343074  T
Q  368 gccatgaaacaccgtaacaaaaccaagccaat 399  Q
    ||||| ||| ||||||||||||||||||||||    
T  41343073 gccattaaaaaccgtaacaaaaccaagccaat 41343042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 104 - 397
Target Start/End: Original strand, 45757377 - 45757669
Alignment:
Q  104 ctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctt 203  Q
    ||||||||||| |||| |||||||||||||||||  ||| ||||||  |||  |  | |||| |||||||| ||||||||| |||||||  |||||||||    
T  45757377 ctgtaaacaacttaaaggattttgtctccaaaagaaata-tcaaaagcgaacatggtaaagtttgctttcaaccaccaaaatgtttgaagcttaaccctt 45757475  T
Q  204 tcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaag 303  Q
    ||||||||||| |  |||||| |  | || ||||||||||| ||| | |||| ||||||||| ||||||||||| ||  || |||| |||||||  ||||    
T  45757476 tcaagaagagcatttagatgatcactgtgattttggaaaattttcctgttgcaatctttccatataacaaataagacaaaagtccagataatagtaaaag 45757575  T
Q  304 ctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagcca 397  Q
     | || || || ||||||| || ||||||| ||||||||| || ||||||||  ||| |||||||||||| || ||||||| || |||||||||    
T  45757576 gtgtcctagaattctttgagaagcctccaaaggcacaaaactgattaacatgtatatgtaaattgccatgtaaaaccgtaataataccaagcca 45757669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 297
Target Start/End: Original strand, 37666030 - 37666239
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    |||||||||| |||| ||||||||||  |||| ||||||  |||||| ||||||| ||||||| |||  ||||| | |  | ||||| ||||||||| ||    
T  37666030 gacattacaaagcagtctgtaaacaaagtaaaggatttttcctccaatagggatagtcaaaatcgaacataatgtaattcgttttcaaccaccaaaatgt 37666129  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||| | ||| ||||||||||| ||||||||||||||| | |  || |  || |||||  || | || | |||||||||||| |  |||||||||||||||    
T  37666130 ttggagtttgaccctttcaagtagagcttcaagatgatcaaattgatgctgaaaaattctcctgtttctatctttccaaatgatgaataaaaccgaaatc 37666229  T
Q  288 caaataatag 297  Q
    ||||||||||    
T  37666230 caaataatag 37666239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 391
Target Start/End: Original strand, 27029772 - 27029932
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    ||||||||||| ||| || | ||||||||||||||||||  | |||| |||||||||||||| ||||  ||||||||| || || ||||||| ||||| |    
T  27029772 tggttttggaatatcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccac 27029871  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaacc 391  Q
    | |  || ||||| || ||| |||| | ||||||||||||||  |  ||||||||||||||    
T  27029872 ctaaagcgcaaaactgattagcatgagaatataaattgccattgagaaccgtaacaaaacc 27029932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 4162047 - 4161989
Alignment:
Q  101 agcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaa 159  Q
    ||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||    
T  4162047 agcctgtaaacaacataaaggattttgtcttcaaaagggatagtcgaaattgaatgtaa 4161989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 391
Target Start/End: Original strand, 10003751 - 10003911
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    ||||||||||| ||| |  | ||||||||||||||||||  | |||| |||||||||||||| ||||  ||||||||| || || ||||||| ||||| |    
T  10003751 tggttttggaatatccttctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccac 10003850  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaacc 391  Q
    | |  || ||||| || ||| |||| | ||||||||||||||  |  ||||||||||||||    
T  10003851 ctaaagcgcaaaactgattagcatgagaatataaattgccattgagaaccgtaacaaaacc 10003911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 48760048 - 48759786
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaa-caaaagccgacattacaaggca 101  Q
    ||||||||| |||| ||||  |||||||||| |||||||||||||||| ||||||||  | |||||  ||||||||| || || | ||| ||||||  ||    
T  48760048 aagcacaagatgtgccaaagaaaattgaaaa-agttaattacaatacaaaaaggctatgagagccataaaacaaaaatcataaacagactttacaacaca 48759950  T
Q  102 gcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccc 201  Q
    | ||||||||||  |||| ||||   ||||||| | | ||||| ||||  |||    ||| |||  ||||||| ||||||||| ||||||| ||| || |    
T  48759949 gtctgtaaacaaggtaaatgattaattctccaataagaataataaaaaacgaacaagatgtagttagctttcaaccaccaaaacgtttgaagtttgactc 48759850  T
Q  202 tttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttcca 265  Q
    ||||||| | | | || | | || | || |||||||||||||||||| | ||||||||||||||    
T  48759849 tttcaagtaaaacctccaaaagaacaatttggttttggaaaatcttcctgttgcgatctttcca 48759786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 399
Target Start/End: Complemental strand, 59026 - 58630
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||||||||| | || | |  |||||| ||||||||||||||||| ||||||| || | |||  || ||||||||||| | ||||||||||| |||    
T  59026 aagcacaaggtgtgccgaagggagctgaaaagagttaattacaatacagtaaggctaaaacaaccataaatcaaaaacaaaaacagacattacaagacag 58927  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||  |||||||||||||||||||||| ||||||  ||| || ||||||| |||||||| ||||||| | ||||||| |||||||||    
T  58926 tctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaaagtgatgaagtttgctttcaaccaccaatatgtttgaagtttaaccct 58827  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    |||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| ||||||||||| |||||||||||||||||||  |||    
T  58826 ttcaagaagagcttcaagatgatccatatggttttggaaaatcctcctgttgcgatctttccatataacaaataagaccgaaatccaaataatagtaaaa 58727  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    ||| || ||    ||||||| ||||||||||| |||||||| || ||| |||| |||| ||||||| | ||||||||||||||||||||||||||||    
T  58726 gctatcatagcgttctttgagaaacctccaagagcacaaaactgattagcatgtgtatttaaattgtcgtgaaacaccgtaacaaaaccaagccaat 58630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 28 - 399
Target Start/End: Original strand, 666881 - 667250
Alignment:
Q  28 tgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttg 127  Q
    |||||| ||||||||||||||||| ||||||| || | |||  || ||||||||||| | ||||||||||| ||| ||||||||||||||  |||||||     
T  666881 tgaaaagagttaattacaatacagtaaggctaaaacaaccataaatcaaaaacaaaaacagacattacaagacagtctgtaaacaacatagtagatttta 666980  T
Q  128 tctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgaccc 227  Q
    ||||||||||||||| ||||||  ||| || ||||||| |||||||| ||||||| |  |||||| || ||| ||||||||||||||||||| |||| ||    
T  666981 tctccaaaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccaccaatatctttgaagtt-aacgctttcaagaagagcttcaaaatgatcc 667079  T
Q  228 atatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaac 327  Q
    |||||||||||||||||| || | |||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  667080 atatggttttggaaaatcctcctgttgcgatctttccatataacaaataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaac 667179  T
Q  328 ctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    ||||||| |||||||| || ||| |||| |||| ||||||||| ||||||||||| | ||||||||||||||    
T  667180 ctccaagagcacaaaactgattagcatgtgtatttaaattgccgtgaaacaccgtta-aaaaccaagccaat 667250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 88 - 399
Target Start/End: Complemental strand, 28605432 - 28605121
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||| | ||| ||||||||||  |||| | |||||||||||||| | ||| ||||||  |||  | | ||||| |||||||| || |||| |  |    
T  28605432 gacattacatgacagtctgtaaacaatgtaaagggttttgtctccaaaaagaatagtcaaaagcgaacatgacgaagtttgctttcaaccgccaataatt 28605333  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
     |||| |||||||||||||| |||||||||||||||  |  | ||||| || |||||| || | || ||||||||||||||||||||||| |||||||||    
T  28605332 ctgaagtttaaccctttcaaaaagagcttcaagatgttcattttggttctgaaaaatcctcctgttacgatctttccaaataacaaataagaccgaaatc 28605233  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaa 387  Q
    ||||||||||  |||||| || || |  |||| || || |||||||| |||||||| || | | |||| | | ||| ||||||||||||||| |||||||    
T  28605232 caaataatagtaaaagctgtcatagacttcttggagaaccctccaagagcacaaaactgatgagcatgtgaaaatagattgccatgaaacacagtaacaa 28605133  T
Q  388 aaccaagccaat 399  Q
     ||||| |||||    
T  28605132 taccaaaccaat 28605121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 100 - 297
Target Start/End: Original strand, 17227617 - 17227814
Alignment:
Q  100 cagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaac 199  Q
    |||||| ||||||||||||  | ||||| ||||| | |||||| ||||||||||| ||||||||||  ||||||| ||||||| | ||||| | ||||||    
T  17227617 cagcctctaaacaacataattggttttgcctccagaggggatagtcaaaattgaaagtaatgaagttcgctttcaaccaccaatacgtttggagtttaac 17227716  T
Q  200 cctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatag 297  Q
    ||||| |||||||||| |||| | | | || || ||||| |||||  |  | |||||||||||||||||||||||||| |||||||||||||||||||    
T  17227717 ccttttaagaagagctgcaagctaatcaatgtgattttgaaaaattcttttgttgcgatctttccaaataacaaataacaccgaaatccaaataatag 17227814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 7218895 - 7218658
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||| | ||| |||||| ||| | ||| |||||||||||||  || |||| | ||||  ||| || || |||| |||||||| ||||||| | |     
T  7218895 gacattacatgacagtctgtaagcaagaaaaaggattttgtctccatgagtgatagtaaaaaacgaacgtgataaagtttgctttcaaccaccaatacgc 7218796  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||||| ||||||| |||| | |||||||||||||||| | |  || ||||| || ||  || |||||||||||||||| |||||| ||||||||||||||    
T  7218795 ttgaagtttaaccttttccaaaagagcttcaagatgaacaacctgtttttgaaatattctcctattgcgatctttccatataacatataaaaccgaaatc 7218696  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaa 325  Q
    ||||| ||||  || |||  |||| | |||||||||||    
T  7218695 caaatgatagtaaacgctaccgtagacctctttgaaaa 7218658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 372
Target Start/End: Complemental strand, 18295995 - 18295657
Alignment:
Q  35 agttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaa-aagccgacattacaaggcagcctgtaaacaacataaaagattttgtctcca 133  Q
    |||||| ||||||||| |||||||| || |||||  |||||||||| | || | ||| ||||||  ||| ||||||||||  |||| |||| | ||||||    
T  18295995 agttaaatacaatacaaaaaggctataagagccataaaacaaaaaccagaaacagactttacaacacagtctgtaaacaaggtaaaggattatttctcca 18295896  T
Q  134 aaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatgg 233  Q
    | | |  |||||||||  |||    ||| |||  ||||||| ||||||||| ||||||| ||| || |||||||  ||| | || | | || | || |||    
T  18295895 ataagagtaatcaaaaacgaacaagatgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaaatagaacctccaaaagaacaatttgg 18295796  T
Q  234 ttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaa 333  Q
    |||||||||||| || | |||||||||||||| |||  | ||||  |||| |||||||||||||  ||||||||| || || ||||||| |||||||| |    
T  18295795 ttttggaaaatcctcttgttgcgatctttccatatagtatataaggccgagatccaaataatagtaaaagctttcatagaattctttgagaaacctccta 18295696  T
Q  334 gggcacaaaattggttaacatgggtatataaattgccat 372  Q
    | || ||||| || ||| |||  ||||||||||||||||    
T  18295695 gagcgcaaaactgattagcattagtatataaattgccat 18295657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 14223694 - 14223505
Alignment:
Q  108 aaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaa 207  Q
    |||||||| ||| |||||||||| ||| ||||| | | ||||  ||| || ||||||| |||||| | ||||||| | ||||||| ||||||| |||| |    
T  14223694 aaacaacaaaaaggattttgtcttcaagagggacagttaaaaacgaacgtgatgaagtttgcttttaaccaccaatacgtttgaagtttaaccgtttcca 14223595  T
Q  208 gaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatag 297  Q
     ||||||||| |||||| | |  || ||| |||||||  || | |||||||| ||||| |||||| |||| ||| |||||||||||||||    
T  14223594 taagagcttccagatgatcaaagtgatttcggaaaattctcttgttgcgatcattccatataacatataagaccaaaatccaaataatag 14223505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 5391982 - 5391926
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  5391982 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 5391926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 9759968 - 9759859
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||| |  |||||| |||||||||  |||||||||| ||||||||| | || || ||||| || ||  || | || |||||||||||||    
T  9759968 gctttcaaccaccaatacatttgaagtttaaccctcccaagaagagcatcaagatgatcaatttgattttgaaatattctcctgttacgatctttccaaa 9759869  T
Q  268 taacaaataa 277  Q
    ||||||||||    
T  9759868 taacaaataa 9759859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 23659877 - 23659941
Alignment:
Q  233 gttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatag 297  Q
    ||||||||||||| |  |||| ||||||||||||| |||||| |  ||||||||||| |||||||    
T  23659877 gttttggaaaatcgtgttattacgatctttccaaacaacaaaaagcaccgaaatccagataatag 23659941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 73890 - 74286
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||| |||||||||| |||  |||||| ||||||||||| || || ||||||| || |||||  || ||||||| ||| | ||| ||||||| |||    
T  73890 aagcacaatgtgtgtcaaaggaagctgaaaagagttaattacattatagtaaggctaaaacagccataaatcaaaaaccaaaacagactttacaagacag 73989  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||  |||||||||||||||||||||| ||||||  ||| || ||| |||  ||||||| ||||||||| ||||||| |||||||||    
T  73990 tctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaacgtgatgtagttagctttcaaccaccaaaacgtttgaagtttaaccct 74089  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    ||||||||||||||| |||||| | || ||||||||||||||| || | |||||||||||||| |||  |||||| |||||||||||||||||||  |||    
T  74090 ttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaaa 74189  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| || || ||||||| ||  |||  || || ||||| || ||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  74190 gctttcatagaattctttgagaagtctcttagagcgcaaaactgattatcatgtgtatataaattgccatgaaacactgtaacaaaaccaagccaat 74286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 399
Target Start/End: Complemental strand, 40892394 - 40891998
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||| |||||||||| |||  |||||| ||||||||||| || || ||||||| || |||||  || ||||||| ||| | ||| ||||||| |||    
T  40892394 aagcacaatgtgtgtcaaaggaagctgaaaagagttaattacattatagtaaggctaaaacagccataaatcaaaaaccaaaacagactttacaagacag 40892295  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||  |||||||||||||||||||||| ||||||  ||| || ||| |||  ||||||| ||||||||| ||||||| |||||||||    
T  40892294 tctgtaaacaacataagggattttgtctccaaaagggatagtcaaaagcgaacgtgatgtagttagctttcaaccaccaaaacgtttgaagtttaaccct 40892195  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    ||||||||||||||| |||||| | || ||||||||||||||| || | |||||||||||||| |||  |||||| |||||||||||||||||||  |||    
T  40892194 ttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaaa 40892095  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| || || ||||||| ||  |||  || || ||||| || ||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  40892094 gctttcatagaattctttgagaagtctcttagagcgcaaaactgattatcatgtgtatataaattgccatgaaacactgtaacaaaaccaagccaat 40891998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 21607830 - 21608135
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||||||||  |||| | |  |||||| ||||||||||| ||||| ||||||| || |||||  || ||||||| ||| | ||| ||||||| |||    
T  21607830 aagcacaaggtgttgcaaagggagctgaaaagagttaattacattacagtaaggctaaaatagccataaatcaaaaaccaaaacagactttacaagacag 21607929  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||||||||||||| | |||||||||||||||||||||||||||  ||| || ||| |||  ||||||| ||||||||| ||||||| |||||||||    
T  21607930 actgtaaacaacataaaggtttttgtctccaaaagggataatcaaaagcgaacgtgatgtagttagctttcaaccaccaaaacgtttgaagtttaaccct 21608029  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    ||||| ||||||||| | |||| | || ||||||||||||||| |||  ||||||||||| || |||| |||||| |||||||||||||||||||  |||    
T  21608030 ttcaaaaagagcttccaaatgatcaatttggttttggaaaatcctcaatttgcgatcttttcatataataaataagaccgaaatccaaataatagtaaaa 21608129  T
Q  303 gctttc 308  Q
    ||||||    
T  21608130 gctttc 21608135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 399
Target Start/End: Original strand, 586541 - 586772
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||| |||| |  | | | || ||||||||||| ||| |    || ||||||||||| |    
T  586541 gctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagaacttccaattaatcaatttggttttggaatatccttcggtttcgatctttccata 586640  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||  ||||||||| ||||| ||||||| || |||||||| || ||||| || ||| |||| |||||||||||    
T  586641 tagtaaataagaccgaaatccaaataatagtgaaagctttcatataattctttgagaagcctccaagagcgcaaaactgattagcatgtgtatataaatt 586740  T
Q  368 gccatgaaacaccgtaacaaaaccaagccaat 399  Q
    | ||||||||||||||||||||||||||||||    
T  586741 gtcatgaaacaccgtaacaaaaccaagccaat 586772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 9403590 - 9403367
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||| |||| |||||| | || |||||||| |||||| || | || |||||||||||||    
T  9403590 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaa 9403491  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| || ||||||  | ||  |||||| ||||||||||| |||||||| || ||  |||| | |||||||||    
T  9403490 tagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatgctttgagaaacctccaagtgcacaaaactgatttgcatgtgaatataaatt 9403391  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  9403390 gccattgagaaccgtaacaaaacc 9403367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 88 - 399
Target Start/End: Complemental strand, 20706037 - 20705726
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||||| ||| ||||||||||  |||| | |||||||||||||||| ||| |||||||| ||  | ||||| | |||||||| ||||||| | ||    
T  20706037 gacattacaagacagtctgtaaacaatgtaaagggttttgtctccaaaaggaatattcaaaattaaacatgatgaaatttgctttcaaccaccaataagt 20705938  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
      ||| |||||||||||||  ||||||||| |||||  |    ||||| || |||||| || |||| ||||||||||||||||| ||||| |||||||||    
T  20705937 ccgaagtttaaccctttcagaaagagcttcgagatgttcatgttggttctgaaaaatcctcctatttcgatctttccaaataacgaataagaccgaaatc 20705838  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaa 387  Q
    ||||||||||  ||||||  |||| |  |||| || || |||||||| |||||||| || | |  ||| | | ||||| ||||||||||||| |||||||    
T  20705837 caaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgcacaaaactgatgagtatgtgaaaataaagtgccatgaaacacagtaacaa 20705738  T
Q  388 aaccaagccaat 399  Q
     ||||| |||||    
T  20705737 taccaaaccaat 20705726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 88 - 399
Target Start/End: Complemental strand, 20874081 - 20873770
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||||| ||| ||||||||||  |||| | |||||||||||||||| ||| |||||||| ||  | ||||| | |||||||| ||||||| | ||    
T  20874081 gacattacaagacagtctgtaaacaatgtaaagggttttgtctccaaaaggaatattcaaaattaaacatgatgaaatttgctttcaaccaccaataagt 20873982  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
      ||| |||||||||||||  ||||||||| |||||  |    ||||| || |||||| || |||| ||||||||||||||||| ||||| |||||||||    
T  20873981 ccgaagtttaaccctttcagaaagagcttcgagatgttcatgttggttctgaaaaatcctcctatttcgatctttccaaataacgaataagaccgaaatc 20873882  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaa 387  Q
    ||||||||||  ||||||  |||| |  |||| || || |||||||| |||||||| || | |  ||| | | ||||| ||||||||||||| |||||||    
T  20873881 caaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgcacaaaactgatgagtatgtgaaaataaagtgccatgaaacacagtaacaa 20873782  T
Q  388 aaccaagccaat 399  Q
     ||||| |||||    
T  20873781 taccaaaccaat 20873770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 400
Target Start/End: Original strand, 27278350 - 27278591
Alignment:
Q  159 atgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgat 258  Q
    ||||||| |||||||| ||||||| | | ||||||||||||||||| ||||||||||||||||||| | || || |||| ||||||  |  | |||||||    
T  27278350 atgaagtttgctttcaaccaccaatacgattgaaatttaacccttttaagaagagcttcaagatgatcaatgtgattttagaaaattatactgttgcgat 27278449  T
Q  259 ctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggt 358  Q
    ||||| | ||||||||||| ||| ||| ||| |||||||  |||||| |  || || || |||| |||||| |||| |||||||| || ||| |||| ||    
T  27278450 ctttcaatataacaaataagaccaaaacccatataatagtaaaagctgttctagaattccttgagaaacctgcaagagcacaaaactgattagcatgtgt 27278549  T
Q  359 atataaattgccatgaaacaccgtaacaaaaccaagccaatg 400  Q
    || |||||||||||| || | |||||||| ||||| ||||||    
T  27278550 atttaaattgccatgtaaaatcgtaacaataccaaaccaatg 27278591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 368
Target Start/End: Complemental strand, 37076055 - 37075855
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||| |||| |||||| | || |||||||| |||||| || | || |||||||||||||    
T  37076055 gctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaa 37075956  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| |||| || |  | ||  |||||| || ||| |||| |||||||| || ||| |||| | |||||||||    
T  37075955 tagtaaataagaccgaaatccaaataatagaaaaagtttgcacagaatgctttgagaatccttcaagtgcacaaaactgattagcatgtgaatataaatt 37075856  T
Q  368 g 368  Q
    |    
T  37075855 g 37075855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 364
Target Start/End: Original strand, 34981604 - 34981800
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| ||||||||||||||| |||| | |||| | || | |||||| |||||| || | || |||||||||||||    
T  34981604 gctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctgttacgatctttccaaa 34981703  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataa 364  Q
    ||  |||||| |||||||||||||||||||| |||| || | || ||  |||||| || |||||||| |||||||| || ||| |||| | ||||||    
T  34981704 tagaaaataagaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataa 34981800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 22866213 - 22866087
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||| |   ||| || || |||||  |||| || | |||||||||||    
T  22866213 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcagaatgattctgaaaaattctcatgtttctatctttccaaa 22866114  T
Q  268 taacaaataaaaccgaaatccaaataa 294  Q
    | || |||||||| |||||||| ||||    
T  22866113 tgacgaataaaactgaaatccagataa 22866087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 368
Target Start/End: Original strand, 12121343 - 12121543
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| || |||||||| ||| | || | | || | || ||||||||||||||| || | |||||||||||||| |    
T  12121343 gctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaatcctcctgttgcgatctttccata 12121442  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  | ||||  | || |||||||||||||  ||||||||| || || ||||||| ||||| || || || ||||| || ||| |||| |||||||||||    
T  12121443 tagtatataaggctgagatccaaataatagtaaaagctttcatagaattctttgagaaaccgcctagagcgcaaaactgattagcatgagtatataaatt 12121542  T
Q  368 g 368  Q
    |    
T  12121543 g 12121543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 18815927 - 18815815
Alignment:
Q  99 gcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaa 198  Q
    ||||| || |||||||||||| ||||||| |||||||||||||| ||||| | ||| |||||| |||  ||||||| ||||||| | ||||| | |||||    
T  18815927 gcagcttgaaaacaacataaatgattttgcctccaaaagggatagtcaaagtcgaacgtaatgtagttcgctttcaaccaccaatatgtttggagtttaa 18815828  T
Q  199 ccctttcaagaag 211  Q
    || ||||||||||    
T  18815827 ccttttcaagaag 18815815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 399
Target Start/End: Original strand, 5196329 - 5196621
Alignment:
Q  107 taaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttca 206  Q
    ||||||||||||||||||||| || ||||| || || || |||| ||| |||||| |||| ||||||| ||||||| | ||||  | ||||||| ||||     
T  5196329 taaacaacataaaagattttgccttcaaaaagggtagtcgaaatcgaacgtaatgtagtgcgctttcaaccaccaatacgtttagagtttaaccttttct 5196428  T
Q  207 agaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    | ||| ||| |||| ||| | || |  || || |||||  || | ||| ||||||| ||||||||||||||  ||| ||||||||||||||  |||| |     
T  5196429 acaagcgctgcaagctgatcaatctaattgtgaaaaattctcctgttgtgatcttttcaaataacaaataaggccgcaatccaaataatagtaaaagttg 5196528  T
Q  307 tcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    || || |  | || ||| | |||||||| |||||||| || ||   |||  ||| ||| | ||||||||| |||||||||| |||||||||||    
T  5196529 tcctagagattttagaatagcctccaagagcacaaaactgttttgaatgaatatttaagtcgccatgaaaaaccgtaacaataccaagccaat 5196621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 391
Target Start/End: Original strand, 24819517 - 24819677
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    ||||||||||||||| || | |||||| ||||||| |||  | |||| |||||||||||||| ||||  ||||||||| || || ||||||| ||||| |    
T  24819517 tggttttggaaaatcctcctgttgcgaactttccatatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccac 24819616  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaacc 391  Q
    | |  || ||||| || ||| |||| | ||||||||||||||  |  ||||||||||||||    
T  24819617 ctaaagcgcaaaactgattagcatgagaatataaattgccattgagaaccgtaacaaaacc 24819677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 391
Target Start/End: Complemental strand, 36575784 - 36575624
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    ||||||||||| ||| || | |||| |||||||||||||  | |||| |||||||||||||| ||||  ||||||||| || || ||||||| ||||| |    
T  36575784 tggttttggaatatcctcctgttgcaatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccac 36575685  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaacc 391  Q
    | |  || ||||| || ||| |||| | ||||||||||||||  |  ||||||||||||||    
T  36575684 ctaaagcgcaaaactgattagcatgagaatataaattgccattgagaaccgtaacaaaacc 36575624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 3483158 - 3483065
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctt 261  Q
    ||||||| ||||||||| ||||| | ||| |||||||||| |||| |||| | |||| | || ||||||||||||||| || | ||||||||||    
T  3483158 gctttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctgttgcgatctt 3483065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 45649626 - 45649570
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| |||||||||  |||||| ||||| |||||||||||||||| ||||||||    
T  45649626 gctttcagccaccaaaacatttgaagtttaatcctttcaagaagagctccaagatga 45649570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 14769788 - 14769686
Alignment:
Q  108 aaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaa 207  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||||| || ||| |||  | ||||| ||||||| | ||||| | ||||||| | ||||    
T  14769788 aaacaacataaaggattttgcctccaaaaggg-tagtcaaaattgaacgttatgtagttcgttttcaaccaccaatatgtttggagtttaaccttctcaa 14769690  T
Q  208 gaag 211  Q
    ||||    
T  14769689 gaag 14769686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 15220239 - 15220137
Alignment:
Q  108 aaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaa 207  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||||| || ||| |||  | ||||| ||||||| | ||||| | ||||||| | ||||    
T  15220239 aaacaacataaaggattttgcctccaaaaggg-tagtcaaaattgaacgttatgtagttcgttttcaaccaccaatatgtttggagtttaaccttctcaa 15220141  T
Q  208 gaag 211  Q
    ||||    
T  15220140 gaag 15220137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 31253038 - 31253113
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    ||||||||||| ||| || | ||||||||||||||||||  | |||| |||||||||||||| ||||  |||||||    
T  31253038 tggttttggaatatcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctt 31253113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 8457559 - 8457521
Alignment:
Q  258 tctttccaaataacaaataaaaccgaaatccaaataata 296  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  8457559 tctttccagataacaaataagaccgaaatccaaataata 8457521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 27868805 - 27868886
Alignment:
Q  316 tctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagcca 397  Q
    ||||||| ||||||||||  ||||||||||| ||| |||| | || |||||| ||||| |  |||||||||| |||||||||    
T  27868805 tctttgagaaacctccaaaagcacaaaattgattagcatgagaatgtaaattaccatgtagaaccgtaacaataccaagcca 27868886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 1760826 - 1760866
Alignment:
Q  255 cgatctttccaaataacaaataaaaccgaaatccaaataat 295  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  1760826 cgatctttctagataacaaataaaaccgcaatccaaataat 1760866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 18815768 - 18815728
Alignment:
Q  258 tctttccaaataacaaataaaaccgaaatccaaataataga 298  Q
    |||||| | ||||||||||| ||||||||||||||||||||    
T  18815768 tctttctagataacaaataagaccgaaatccaaataataga 18815728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 27868667 - 27868723
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||| | ||||| | ||||| |||||||||||||||||| ||||||    
T  27868667 gctttcaaccaccaatacgtttggattttaatcctttcaagaagagcttctagatga 27868723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 132 - 399
Target Start/End: Original strand, 38938193 - 38938460
Alignment:
Q  132 caaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatat 231  Q
    ||||||||||||||||||  ||| || ||||||| |||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||  ||||||    
T  38938193 caaaagggataatcaaaagcgaacgtgatgaagtttgctttcaaccgccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatggtccatat 38938292  T
Q  232 ggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctcc 331  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||  ||||||||| || || |||||||||| ||||     
T  38938293 ggttttggaaaatcatcatgttgcgatctttccaaataacaaataagacagaaatccaaataatagtaaaagctttcatagaattctttgaaaagcctct 38938392  T
Q  332 aagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    ||| |||||||| || ||| |||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  38938393 aagagcacaaaaatgattagcatgtgtatataaattgccattaaacaccataacaaaaccaagccaat 38938460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 391
Target Start/End: Original strand, 21963165 - 21963388
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||  |||| |||||| | || |||||||| |||||| || | ||||||||||||||||    
T  21963165 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttgaaaaatcctcctgttgcgatctttccaaa 21963264  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| ||||||| |  | ||  |||||| ||||| ||||| |||||||| || ||| |||| | |||||||||    
T  21963265 tagtaaataagaccgaaatccaaataatagaaaaagcttgcacaaaatgctttgagaaaccgccaagtgcacaaaactgattagcatgtgaatataaatt 21963364  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    ||||| ||  ||||| ||||||||    
T  21963365 gccattaagaaccgtcacaaaacc 21963388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 27915066 - 27914843
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||| |||  | |||| | || ||||||||||||||| || | |||||||||||||| |    
T  27915066 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaactttcaaatgaacaatttggttttggaaaatcctcctgttgcgatctttccata 27914967  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||  || ||||||  | || ||||||| ||||||||||| |||||||| |||||  |||| | |||||||||    
T  27914966 tagtaaataagaccgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcacaaaactggtttgcatgtgaatataaatt 27914867  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  27914866 gccattgagaaccgtaacaaaacc 27914843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 168 - 391
Target Start/End: Original strand, 23384600 - 23384823
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| |||||||||  |||| | ||| ||||||||||||||| |||| | |||| | || |||||||| |||||| || | ||| |||||||||| |    
T  23384600 gctttcaaccaccaaaacatttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcctgttgtgatctttccata 23384699  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| || ||||||  | || ||||||| ||||||||||| | |||||| || ||  |||| | |||||||||    
T  23384700 tagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagtacaaaactgatttgcatgtgaatataaatt 23384799  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  23384800 gccattgagaaccgtaacaaaacc 23384823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 88 - 347
Target Start/End: Complemental strand, 33937320 - 33937063
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    |||||||||| |||| ||||||||||  |||| |||||| ||||||| ||||||| ||||||| |||  | ||| | |  ||||||| ||||||| | ||    
T  33937320 gacattacaaagcagtctgtaaacaagctaaaggattttttctccaatagggatagtcaaaatcgaacatgatgtaattcgctttcaaccaccaatacgt 33937221  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||| | ||||||||||||||| ||||||||||||||| | |  || || || |||||  || | || | |||||||||||| || |||||||||||||||    
T  33937220 ttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattctgaaaaattctcctgtttctatctttccaaatgacgaataaaaccgaaatc 33937121  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattgg 347  Q
    ||||||| ||  ||  || |||  ||  | ||||||||||||||||| ||||||||||||    
T  33937120 caaataacagtaaatcctgtcg--tagttttttgaaaaacctccaagagcacaaaattgg 33937063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 32349694 - 32349851
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    ||||||||||||||| || | |||||||||||||| |||    |||| |||||||||||||||||||  ||||||||| || || ||||||| |||||||    
T  32349694 tggttttggaaaatcctcctgttgcgatctttccatatagtgtataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacctc 32349793  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaa 388  Q
    | || || ||||| || ||| |||| ||||||||||||||||  |  |||||||||||    
T  32349794 ctagagcgcaaaactgattagcatgagtatataaattgccattgagaaccgtaacaaa 32349851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 20534523 - 20534376
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaa-agccaggaaacaaaaacaaaagccgacattacaaggca 101  Q
    ||||||||| ||||||||| | |  ||| || ||||||||||||||||| ||||||  ||| | |||  || |||||||||||   ||||||||||| ||    
T  20534523 aagcacaagttgtgtcaaagggagctgagaagagttaattacaatacagtaaggctcaaaacaaccataaatcaaaaacaaaaatagacattacaagaca 20534424  T
Q  102 gcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaa 149  Q
    | ||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  20534423 gtctgtaaataacataagagattttgtcttcaaaagggataatcaaaa 20534376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 400
Target Start/End: Original strand, 22298576 - 22298901
Alignment:
Q  75 aaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttca 174  Q
    ||||||| || | ||||||||||  ||| ||||||||||  |||| ||||||  |||||| ||||||| |||||||  ||  | ||| | |  |||||||    
T  22298576 aaaaacagaaccagacattacaaaacagtctgtaaacaaactaaaggatttttcctccaatagggatagtcaaaatcaaacatgatgtaattcgctttca 22298675  T
Q  175 tccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaa 274  Q
     ||||||| | ||||| | ||||||||||||||| ||||||||||||||| | |  || ||||| |||||  || | || | |||||| || || || ||    
T  22298676 accaccaatacgtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattttgaaaaattctcctgtttcaatcttttcatatgacgaa 22298775  T
Q  275 taaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatga 374  Q
    || ||||||||||||||| | ||  ||  || || || |  | ||||| ||||||||||| |||||||||||| || |||| |  | |||||| |||||     
T  22298776 tataaccgaaatccaaatgacagtaaagcctgtcctagagttttttgagaaacctccaagagcacaaaattgggtagcatgtgagtgtaaattaccatgt 22298875  T
Q  375 aacaccgtaacaaaaccaagccaatg 400  Q
    || |||||||||| ||||||||||||    
T  22298876 aaaaccgtaacaataccaagccaatg 22298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 391
Target Start/End: Original strand, 30275710 - 30275869
Alignment:
Q  231 tggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctc 330  Q
    ||||||||||||||  || | ||||||||||| || |||  | |||| |||||||||||||||||||  ||||||||| || || ||||||| ||||||     
T  30275710 tggttttggaaaattctcctgttgcgatcttttcatatagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacct- 30275808  T
Q  331 caagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaacc 391  Q
    | || || ||||| || ||| |||| |||||||||||||| |  |  ||||||||||||||    
T  30275809 ctagagcgcaaaactgattagcatgagtatataaattgccgttgagaaccgtaacaaaacc 30275869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 20007345 - 20007385
Alignment:
Q  258 tctttccaaataacaaataaaaccgaaatccaaataataga 298  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  20007345 tctttccagataacaaataagaccgaaatccaaataataga 20007385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 3 - 399
Target Start/End: Complemental strand, 31423845 - 31423449
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaa-agccaggaaacaaaaacaaaagccgacattacaaggca 101  Q
    ||||| |||||||| |||| | |  |||||| ||||||||||||||||| ||||||| ||| | |||  || ||||||||||| | ||||||||| |  |    
T  31423845 aagcataaggtgtgccaaagggaggtgaaaagagttaattacaatacagcaaggctaaaaacaaccataaatcaaaaacaaaa-cagacattacatgata 31423747  T
Q  102 gcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccc 201  Q
    | |||||||||||||||  |||||||||||||||||||||| ||||||  ||| ||  |||||| |||||||| ||||||| | ||||||| ||||||||    
T  31423746 gtctgtaaacaacataatggattttgtctccaaaagggatagtcaaaagcgaacgtgctgaagtttgctttcaaccaccaataagtttgaagtttaaccc 31423647  T
Q  202 tttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaa 301  Q
    |||||| ||||||||| |||||| | || ||||||||||||||| || | ||||||||||| |||||||||||||| ||||||||||| |||||||  ||    
T  31423646 tttcaaaaagagcttcgagatgatcaatttggttttggaaaatcctcctgttgcgatcttttcaaataacaaataagaccgaaatccatataatagtaaa 31423547  T
Q  302 agctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    || | || || |  ||||||| ||||||||||| |||||||| || ||| |||| | || ||||||| | |||||||||||||||| ||||| |||||    
T  31423546 agttgtcctagagttctttgagaaacctccaagagcacaaaactgattagcatgtgaatttaaattgtcgtgaaacaccgtaacaataccaaaccaat 31423449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 400
Target Start/End: Complemental strand, 26390767 - 26390474
Alignment:
Q  107 taaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttca 206  Q
    |||||||| ||||  ||||||||||||||||| ||||||||||  |||  | || ||||||||||||| ||||||||| |||||||  |||| |||||||    
T  26390767 taaacaacttaaagaattttgtctccaaaaggaataatcaaaagcgaacatgataaagtgtgctttcaaccaccaaaacgtttgaagcttaatcctttca 26390668  T
Q  207 agaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    |||||||| || |||||| |  | || |||||||||||  || | |||||||||||||| ||||||||||| || ||| ||||||||||||  |||| |     
T  26390667 agaagagcctctagatgatcactgtgattttggaaaattctcctgttgcgatctttccatataacaaataagacagaagtccaaataatagtaaaagttg 26390568  T
Q  307 tcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaatg 400  Q
    || || || ||||||| ||||| || ||||||||||| |||||| ||||  |||  || |||||||| || |||||||||| |||||| |||||    
T  26390567 tcctagaattctttgagaaaccaccgagggcacaaaactggttagcatgtatatgcaatttgccatgtaaaaccgtaacaataccaagtcaatg 26390474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 26078191 - 26077968
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| || |||||||||||| | || | | || | |||||||| ||||||||| || | ||||||||||||||||    
T  26078191 gctttcaaccaccaaaacgtttgaagtttgactctttcaagaagaacatccaaaagaacaatatggttatggaaaatcctcctgttgcgatctttccaaa 26078092  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  | |||| ||||| |||||||||||||| ||||||||| || || ||||||| || ||||| || || ||||| || ||| |||| |||||||||||    
T  26078091 tagtatataagaccgagatccaaataatagaaaaagctttcatagaattctttgagaaccctcctagagcgcaaaactgattagcatgagtatataaatt 26077992  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  26077991 gccattgagaaccgtaacaaaacc 26077968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 368
Target Start/End: Original strand, 29529870 - 29530130
Alignment:
Q  107 taaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttca 206  Q
    |||||||| |||| ||||||||||| |||||| ||||||||||  |||  | || |||| |||||||| ||||||||| |||||||  ||||||||||||    
T  29529870 taaacaacttaaaggattttgtctctaaaaggaataatcaaaagcgaacatgataaagtttgctttcaaccaccaaaatgtttgaagcttaaccctttca 29529969  T
Q  207 agaagagcttcaagatgacccatatggttttggaaaa-tcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagct 305  Q
    |||||||| || |||||| |  | || |||||||||| ||||| | || ||||||||||| ||||||||||| || ||| |||| |||||||  |||| |    
T  29529970 agaagagcatctagatgatcactgtgattttggaaaattcttc-tgttacgatctttccatataacaaataagacagaagtccagataatag-gaaagtt 29530067  T
Q  306 ttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattg 368  Q
     || || || ||||||| |||||| ||||||||||||| || ||| ||||  ||| |||||||    
T  29530068 gtcctagaattctttgagaaacctacaagggcacaaaactgattagcatgtatatgtaaattg 29530130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 364
Target Start/End: Complemental strand, 2960055 - 2959859
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||||| ||| ||||||||||||||| |||| | |||| | || | |||||| |||||| || | || |||||||||||||    
T  2960055 gctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcctcctgttacgatctttccaaa 2959956  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataa 364  Q
    ||  |||||| |||||||||||||||||||| |||| || | || ||  |||||| || |||||||| |||||||| || ||| |||| | ||||||    
T  2959955 tagaaaataagaccgaaatccaaataatagaaaaagtttacatagaatgctttgagaatcctccaagtgcacaaaactgattagcatgtgaatataa 2959859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 13099673 - 13099552
Alignment:
Q  27 ttgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagatttt 126  Q
    ||||||| |||||||||||| |||| ||| ||| || | |||  || |||||||||||   ||||||||||| ||  ||||||||||||||| |||||||    
T  13099673 ttgaaaagagttaattacaacacagtaagactaaaacaaccataaatcaaaaacaaaata-gacattacaagacaatctgtaaacaacataagagatttt 13099575  T
Q  127 gtctccaaaagggataatcaaaa 149  Q
     ||||||||| ||||||||||||    
T  13099574 atctccaaaaaggataatcaaaa 13099552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 18182108 - 18182166
Alignment:
Q  237 tggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataat 295  Q
    ||||||||| || | || |||||||||||||||||||||||||||||||| ||||||||    
T  18182108 tggaaaatcctcttgttacgatctttccaaataacaaataaaaccgaaattcaaataat 18182166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 9098393 - 9098333
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaa 149  Q
    ||||||||| | ||| ||||||||||  |||  |||||||||||||||||||||||||||||    
T  9098393 gacattacatgacagtctgtaaacaatgtaag-gattttgtctccaaaagggataatcaaaa 9098333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 399
Target Start/End: Original strand, 11265617 - 11266013
Alignment:
Q  3 aagcacaaggtgtgtcaaaagaaattgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcag 102  Q
    |||||||||||||| | || |||  |||||  |||||||||||||||||||||||||  | ||||   || || |||||||| | || |||||||| |||    
T  11265617 aagcacaaggtgtgcctaaggaagctgaaacaagttaattacaatacagaaaggctaacacagccttaaatcagaaacaaaaacagagattacaagacag 11265716  T
Q  103 cctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccct 202  Q
     |||||| |||||  || |||||||||||||||| |||||||| ||| | || || ||||||  |||||||| ||||||| | ||||||| |||||||||    
T  11265717 actgtaagcaacaggaaggattttgtctccaaaaaggataatcgaaagtaaaggtgatgaaggttgctttcaaccaccaataagtttgaagtttaaccct 11265816  T
Q  203 ttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaa 302  Q
    |||||| ||||||||||||||| ||| ||| |  || |||||| || | || ||||||||||||||||||||||| |||||||||||||||||||  |||    
T  11265817 ttcaaggagagcttcaagatgatccaaatgatgctgaaaaatcctcctgttacgatctttccaaataacaaataagaccgaaatccaaataatagtaaaa 11265916  T
Q  303 gctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    |||||| || |  || |||| ||||||||||| |||||||| || ||| |||| ||   |||||| || || | |||||||||||||||||||||||    
T  11265917 gctttcatagacttccttgagaaacctccaagagcacaaaactgattagcatgtgttgttaaatttccgtgtagcaccgtaacaaaaccaagccaat 11266013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 35 - 399
Target Start/End: Original strand, 27891322 - 27891686
Alignment:
Q  35 agttaattacaatacagaaaggctagaaa-agccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttgtctcca 133  Q
    |||||||||||| |||  ||||||| ||| |||||  || |||||| |||| | ||||||||| | ||| | ||||||||  |||  |||||||||| ||    
T  27891322 agttaattacaacacattaaggctaaaaacagccataaatcaaaaataaaa-cagacattacatgacagtccgtaaacaaagtaatggattttgtcttca 27891420  T
Q  134 aaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatgg 233  Q
    ||||||||| ||||||  ||| || ||||||| |||||||| ||||||| | ||||||| |||||||||||||| ||||||||  |||||  | || |||    
T  27891421 aaagggatagtcaaaagcgaacgtgatgaagtttgctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagctttgagatgttcaatttgg 27891520  T
Q  234 ttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaa 333  Q
    || || |||||| || | |||||||||||||||||||||||||| ||| ||||||| |||||||  |||| | || || |  ||||||| || |||||||    
T  27891521 ttctgaaaaatcctcctgttgcgatctttccaaataacaaataagacctaaatccatataatagtaaaagatgtcctagacttctttgagaaccctccaa 27891620  T
Q  334 gggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaaaaccaagccaat 399  Q
    | |||||||| || ||| |||| | | ||| ||||||||||||||||||||||| ||||| |||||    
T  27891621 gagcacaaaactgattagcatgtgaaaatatattgccatgaaacaccgtaacaataccaaaccaat 27891686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 5825434 - 5825211
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||  |||| |||||| | || |||||||| |||||| || | ||||||||||||||||    
T  5825434 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttgaaaaatcctcctgttgcgatctttccaaa 5825335  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||| ||||||| |  ||||  |||||| ||||| ||||| |||||||| || ||| |||| | |||||||||    
T  5825334 tagtaaataagaccgaaatccaaataatagaaaaagcttgcacataatgctttgagaaaccgccaagtgcacaaaactgattagcatgtgaatataaatt 5825235  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    ||||| ||  ||||||||||||||    
T  5825234 gccattaagaaccgtaacaaaacc 5825211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 10462602 - 10462379
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||| |||| | |||| | || ||||||||||||||| || |||||||||||||||| |    
T  10462602 gctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccaaatgaacaatttggttttggaaaatcctcctattgcgatctttccata 10462503  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    ||  |||||| |||||||||||||||||||  || ||||||  | || ||||||| ||||||||||| |||||||  |||||  |||| | |||||||||    
T  10462502 tagtaaataagaccgaaatccaaataatagtaaatgctttcacagaattctttgagaaacctccaagagcacaaatctggtttgcatgtgaatataaatt 10462403  T
Q  368 gccatgaaacaccgtaacaaaacc 391  Q
    |||||  |  ||||||||||||||    
T  10462402 gccattgagaaccgtaacaaaacc 10462379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 104 - 387
Target Start/End: Original strand, 29149998 - 29150281
Alignment:
Q  104 ctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatg--aagtgtgctttcatccaccaaaaggtttgaaatttaaccc 201  Q
    |||||||||||||||| ||||||||||| |||||| ||| | ||||  |||||| |||  |||| |||||||| |||| || | ||||||| ||||||||    
T  29149998 ctgtaaacaacataaaggattttgtctcaaaaagg-atagtaaaaaa-gaatgtgatgtgaagtttgctttcaaccacgaatacgtttgaagtttaaccc 29150095  T
Q  202 tttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatccaaataatagacaa 301  Q
    |||||| |||||||||||||||| | |  || ||||||||||| ||  | || ||||||||||| |||||| |||| | | |||||||||||||||  ||    
T  29150096 tttcaataagagcttcaagatgatcaaagtgattttggaaaatttttctctttcgatctttccatataacatataagatcaaaatccaaataatagtaaa 29150195  T
Q  302 agctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaattgccatgaaacaccgtaacaa 387  Q
     ||| ||||| |||||||||| || |  || || |||||||| || ||| |||| |||| ||||||| |||| || ||||||||||    
T  29150196 cgctatcgtagaactctttgagaagctaccgagagcacaaaactgattagcatgagtatttaaattgtcatgtaaaaccgtaacaa 29150281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 306
Target Start/End: Complemental strand, 6679041 - 6678903
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||| |||| |||||| | || |||||||| |||||| || | || |||||||||||||    
T  6679041 gctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgttacgatctttccaaa 6678942  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctt 306  Q
    ||  |||||| |||||||||||||||||||| |||||||    
T  6678941 tagtaaataagaccgaaatccaaataatagaaaaagctt 6678903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 347
Target Start/End: Original strand, 38931446 - 38931705
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||||  ||| ||| | |||| ||||| |||| |  ||||||||||| |||||||||| |||   |||| | |  ||||||| ||||||||| ||    
T  38931446 gacattacaacacagtctgaatacaaaataaaggattattcctccaaaaggggtaatcaaaatcgaacaaaatgtaattcgctttcaaccaccaaaacgt 38931545  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||||| ||||||||||||||||||||||||||||||| | |  || || || |||||  || | || | |||||||||||| |  |||||||||||||||    
T  38931546 ttgaagtttaaccctttcaagaagagcttcaagatgatcaaagtgattctgaaaaattctcctgtttctatctttccaaatgatgaataaaaccgaaatc 38931645  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattgg 347  Q
    |||||||  |  ||| || || || |  | ||||| ||||||||||| ||||||||||||    
T  38931646 caaataactgtaaaacctgtcctagagttttttgagaaacctccaagagcacaaaattgg 38931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 25907503 - 25907386
Alignment:
Q  28 tgaaaatagttaattacaatacagaaaggctagaaaagccaggaaacaaaaacaaaagccgacattacaaggcagcctgtaaacaacataaaagattttg 127  Q
    |||||| ||||||||||||||||| ||||||| || ||||   || ||||||  |||  | |||||||||||||| ||||||||||||||| ||||||||    
T  25907503 tgaaaagagttaattacaatacagtaaggctaaaacagccgtaaatcaaaaaacaaaaacaacattacaaggcagtctgtaaacaacataagagattttg 25907404  T
Q  128 tctccaaaagggataatc 145  Q
    |||| |||||| ||||||    
T  25907403 tctcaaaaaggaataatc 25907386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 397
Target Start/End: Complemental strand, 31963137 - 31962908
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| ||||||| | ||||| | |||||||||||||||||||||||| |||||| | || || |  || |||||  || | || || ||||||||||    
T  31963137 gctttcaaccaccaatacgtttggattttaaccctttcaagaagagcttctagatgatcaatgtgatgctgaaaaattctcctgtttcggtctttccaaa 31963038  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatgggtatataaatt 367  Q
    | |||||||  ||||||||| |||||||||  ||| || || || |  ||||||| |||||||||||  |||||||||| ||| |||| | || ||||||    
T  31963037 tgacaaatagtaccgaaatcgaaataatagtaaaacctgtcctagagttctttgagaaacctccaagaccacaaaattgattagcatgagaatgtaaatt 31962938  T
Q  368 gccatgaaacaccgtaacaaaaccaagcca 397  Q
     ||||| |  | |||||||| |||||||||    
T  31962937 accatgtagaatcgtaacaataccaagcca 31962908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 347
Target Start/End: Original strand, 8895141 - 8895320
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaa 267  Q
    ||||||| |||| |||  ||||||| ||||||||||||||||||||||| ||||||| | |  || || || |||||  || | || | |||||||||||    
T  8895141 gctttcaaccactaaaccgtttgaagtttaaccctttcaagaagagctttaagatgatctaagtgattctgaaaaattctcctgtttctatctttccaaa 8895240  T
Q  268 taacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattgg 347  Q
    | || |||||||| |||||||||||||  |  ||| || || || || | ||||| ||||||||||| ||||||||||||    
T  8895241 tgacgaataaaactgaaatccaaataactgtaaaacctgtcctagaattttttgagaaacctccaagagcacaaaattgg 8895320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 29322550 - 29322606
Alignment:
Q  168 gctttcatccaccaaaaggtttgaaatttaaccctttcaagaagagcttcaagatga 224  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  29322550 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 29322606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 16862831 - 16862796
Alignment:
Q  260 tttccaaataacaaataaaaccgaaatccaaataat 295  Q
    |||||| |||||||||||||||||||||||||||||    
T  16862831 tttccatataacaaataaaaccgaaatccaaataat 16862796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 225269 - 225032
Alignment:
Q  88 gacattacaaggcagcctgtaaacaacataaaagattttgtctccaaaagggataatcaaaattgaatgtaatgaagtgtgctttcatccaccaaaaggt 187  Q
    ||||||||| | ||| |||||| ||| | ||| |||||||||||||  || |||  |||||   ||| || || |||| ||||||||  |||||| | ||    
T  225269 gacattacatgacagtctgtaagcaagaaaaaggattttgtctccatgagtgatggtcaaagacgaacgtgataaagtttgctttcaatcaccaatacgt 225170  T
Q  188 ttgaaatttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatcttcatattgcgatctttccaaataacaaataaaaccgaaatc 287  Q
    ||||| ||||||| |||| | |||||||||||||||| | |  || ||||| || ||  || |||||||||||||||| |||||||||||||||||||||    
T  225169 ttgaagtttaaccttttccaaaagagcttcaagatgaacaacctgcttttgaaatattctcctattgcgatctttccatataacaaataaaaccgaaatc 225070  T
Q  288 caaataatagacaaagctttcgtataactctttgaaaa 325  Q
    ||||| ||||  || |||  |||| | |||||||||||    
T  225069 caaatgatagtaaacgctaccgtagacctctttgaaaa 225032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 400
Target Start/End: Original strand, 10912 - 11054
Alignment:
Q  258 tctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcgtataactctttgaaaaacctccaagggcacaaaattggttaacatggg 357  Q
    |||||||| |||||| |||| |||||||||||||||||||| |||| | |  |  || | ||||| ||||||||||| ||||||||||| ||   |||      
T  10912 tctttccagataacagataagaccgaaatccaaataatagagaaagttgtacttgaattttttgataaacctccaagagcacaaaattgatttgaatgat 11011  T
Q  358 tatataaattgccatgaaacaccgtaacaaaaccaagccaatg 400  Q
    ||||||||| ||||||||  || ||| | | ||||||||||||    
T  11012 tatataaatcgccatgaagaactgtatcgataccaagccaatg 11054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University