View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7301_low_7 (Length: 303)

Name: NF7301_low_7
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7301_low_7
NF7301_low_7
[»] chr4 (1 HSPs)
chr4 (15-303)||(40336613-40336892)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 40336892 - 40336613
Alignment:
Q  15 tatcaataaacagacaagagtgttaacatcgttttagaagaaaatcatggacatgatatttctttattgaatattgaagatttttcttgagctagaagat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40336892 tatcaataaacagacaagagtgttaacatcgttttagaagaaaatcatggacatgatatttctttattgaatattgaagatttttcttgagctagaagat 40336793  T
Q  115 aatgaagtttagaatccacacaacaaatgcaaataaaccacatacacgggaaaattgaaggggaaaagattcaaaatggataagatcagaaccaagtcgg 214  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  40336792 aatgaagtttggaatccacacaacaaaggcaaataaaccacatacacgggaaaattgaa-gggaaaagattcaaaatggata-------aaccaagtcgg 40336701  T
Q  215 tccaagattcaacttttcatttgcattttctcaaagttatcgtatctcttcttctctccannnnnnnaacaaaatattccaacaaacaa 303  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||       ||||||||||||||||||||||    
T  40336700 tccaagattcaacttttcatttgcatttt-tcaatgttatcgtatctcttcatctctccatttttttaacaaaatattccaacaaacaa 40336613  T

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