View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7301_low_9 (Length: 297)
Name: NF7301_low_9
Description: NF7301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7301_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 37992819 - 37993089
Alignment:
| Q |
1 |
ttaaactttagaagctagcacgaatgcactgccaacctgtacggagctagaagctttaggtgccagcatatttaaattctaaaagcaggtaggtattgat |
100 |
Q |
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| T |
37992819 |
ttaaactttagaagctagcacgaatgcactgccaacctgtacggagctagaagctttaggtgccagcatatttaaattctaaaagcaggt----attgat |
37992914 |
T |
|
| Q |
101 |
gcttatattatatcccacttctcaaaagcataggtggtaggttcatgtatattccagaataaattctcttttggttcatctaattattatcttatccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37992915 |
gcttatattatatcccacttctcaaaagcataggtggtaggttcatgtatattccagaataaattctcttttggttcatctaattattatcttatccaac |
37993014 |
T |
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| Q |
201 |
atgtatatataattgagttcattttaagtctaaacttttgttggataataatgtatagtatttacttatttagtt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37993015 |
atgtatatataattgagttcattttaagtctaaacttttgttggataataatgtatagtatttacttatttagtt |
37993089 |
T |
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