View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7302_high_4 (Length: 359)

Name: NF7302_high_4
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7302_high_4
NF7302_high_4
[»] chr4 (6 HSPs)
chr4 (1-347)||(8122810-8123156)
chr4 (1-321)||(19803968-19804287)
chr4 (1-298)||(17129897-17130194)
chr4 (2-277)||(5119454-5119728)
chr4 (115-192)||(22643797-22643874)
chr4 (1-111)||(14037190-14037300)
[»] chr2 (3 HSPs)
chr2 (1-294)||(20483346-20483639)
chr2 (1-294)||(28017545-28017838)
chr2 (179-279)||(23681149-23681249)
[»] chr5 (5 HSPs)
chr5 (1-298)||(16990507-16990804)
chr5 (179-277)||(36732354-36732452)
chr5 (180-228)||(42139980-42140028)
chr5 (2-165)||(26472244-26472407)
chr5 (179-225)||(23903108-23903154)
[»] scaffold1416 (1 HSPs)
scaffold1416 (1-294)||(922-1215)
[»] chr6 (4 HSPs)
chr6 (1-294)||(6342516-6342809)
chr6 (98-230)||(28300229-28300361)
chr6 (98-230)||(28511712-28511844)
chr6 (180-228)||(28519428-28519476)
[»] chr7 (3 HSPs)
chr7 (181-277)||(3003853-3003949)
chr7 (180-234)||(38847025-38847079)
chr7 (180-228)||(18481374-18481422)
[»] chr1 (3 HSPs)
chr1 (179-277)||(37738495-37738593)
chr1 (180-228)||(6531180-6531228)
chr1 (116-186)||(52778125-52778195)
[»] chr3 (3 HSPs)
chr3 (2-292)||(55310276-55310566)
chr3 (122-186)||(12285751-12285815)
chr3 (116-168)||(19586494-19586546)
[»] chr8 (1 HSPs)
chr8 (180-228)||(21029347-21029395)
[»] scaffold0669 (1 HSPs)
scaffold0669 (116-221)||(358-463)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8123156 - 8122810
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8123156 ctggtcctatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 8123057  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8123056 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagttacaacctagagccagaaagtgtgttt 8122957  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaattaatact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8122956 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaattaatact 8122857  T
Q  301 gccatatccttcttcttccacttcccctacttcaaattggcaatatt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8122856 gccatatccttcttcttccacttcccctacttcaaattggcaatatt 8122810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 19804287 - 19803968
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||    
T  19804287 ctggtcatatacagttttgcattcagtttttctcatcaatagagtatctactccccttcttaaacacaaatatccatatcaggttctctataactcttta 19804188  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    |||||| |||| |||||  |||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||  |||| |  ||||||||| |||    
T  19804187 cctgatattcaatctttccaggtctttggttgcttgtgttatgcttccacacttcaagctcatagaaccaaattacagtctagggatagaaagtgtattt 19804088  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaattaatact 300  Q
    |||| | ||| ||||||||||| ||||| | ||| |||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||| |    
T  19804087 tcttggaatacaagtcaggttttaaagggtttgtactctttgatcttgattctagagaaat-tttatctctagaaatgttgtttttcatgaattaatatt 19803989  T
Q  301 gccatatccttcttcttccac 321  Q
    | |||||||| ||||||||||    
T  19803988 gtcatatcctccttcttccac 19803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 17129897 - 17130194
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||| ||||  |||||||||||||||||  ||||||||||||| || ||||| ||||||||| |||||||||||||||| || || ||| ||||||||    
T  17129897 ctggtcttatgtagttttgcattcagttttcatcatcaatagagtttccactcctcttcttaaatacaaatctccatatcaggtactttatgattcttta 17129996  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    |||||  |||| || || |  || |||||||| ||||||||||| || || || |||||||||||||| || |  ||  |||||| ||||||||| ||||    
T  17129997 cctgacattcagtccttcagagtttttggttgcttgtgttatgcatctactctacaagctcatagaacaaaattgcagtctagagtcagaaagtgggttt 17130096  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaattaata 298  Q
    |||| || || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||    
T  17130097 tcttgggttacaagtcaggttttaaaggatctgttctctttgatcttgattctagagaaatctttatctctagaaatgttgttttccatgaattaata 17130194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 5119454 - 5119728
Alignment:
Q  2 tggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattctttac 101  Q
    ||||||||||| ||||| ||| |||||||||| |||||||||||| |||||||  | |||    |||||||||| ||||  ||| | ||| |||| ||||    
T  5119454 tggtcatatgcagttttacatgcagtttttcttatcaatagagtccctactcctatccttcgcaacaaatctccttatcgtgttttgtatgattcattac 5119553  T
Q  102 ctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgtttt 201  Q
     ||||||  |||||||||| || ||||| || |||| ||||||||| || ||||| ||||||| |||  | |  ||| ||||||| ||||| | ||||||    
T  5119554 ttgatgtcaattcttttaaagtttttggatgtttgtcttatgcttctactcttcaggctcata-aacataattgcaatctagagctagaaaatctgtttt 5119652  T
Q  202 cttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaat 277  Q
    |||||| || |||||||| | |||||| | ||| || | |||||||||| | | |||||| ||| | |||||||||    
T  5119653 cttagggtacaagtcaggatacaaaggttttgttctatatgatcttgataccaaagaaatttttatttctagaaat 5119728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 22643797 - 22643874
Alignment:
Q  115 ttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaa 192  Q
    ||||||||| |||||||| || |||||||||||||| ||||||  ||| |||||||| | |||| ||||||| |||||    
T  22643797 ttttaaggtttttggttgcttatgttatgcttccactcttcaaaatcacagaaccaaattacaatctagagctagaaa 22643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14037190 - 14037300
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||| ||||| |||||  | |||||||| ||||| ||||||||| |||||||  ||||| | ||||||||||| ||| | ||| ||||| ||||  ||    
T  14037190 ctggtcttatgctgttttatactcagttttcctcataaatagagtccctactccttttcttcaccacaaatctccttattaggttttatatgattcacta 14037289  T
Q  101 cctgatgttca 111  Q
    |||||| ||||    
T  14037290 cctgatattca 14037300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 20483639 - 20483346
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||||||||| |||||||||| |||||||||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| ||     
T  20483639 ctggtcatatgctgttttgcatttagtttttctcataaatagagtttcaactcctcttctcaaacataaatctccttatcatgttttatatgattcattg 20483540  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    |||||| ||||||||||||| || ||||||||  | ||||||||||| |||||||||||||||||||| || | |||| ||||||||||||||||| |||    
T  20483539 cctgatattcattcttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatagaacaaaattacaatctagagccagaaagtgtattt 20483440  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaatt 294  Q
    ||||||| || ||||| || |||||||| || || || |||||| |  |||| |||||||||||||| || |||||| |||| |||||||||||    
T  20483439 tcttaggttacaagtctggattcaaaggttcagttctttttgatttacattccagagaaatctttgtttccagaaatgttgtttttcatgaatt 20483346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 28017545 - 28017838
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| ||     
T  28017545 ctggtcatatgctgttttgcattcagtttttctcataaatagagtttcaactcctcttctcaaacataaatctccctatcatgttttatatgattcattg 28017644  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    | |||| ||||||||||||| || ||||||||  | ||||||||||| |||||||||||||||| ||| || | |||| ||||||||||||||||| |||    
T  28017645 cttgatattcattcttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagccagaaagtgtattt 28017744  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaatt 294  Q
    ||||||| || ||||| || |||||||| ||  |  | |||||| |  |||| |||||||||||||| || |||||| |||| |||||||||||    
T  28017745 tcttaggttacaagtctggattcaaaggctcaattgtttttgatttacattccagagaaatctttgtttccagaaatgttgtttttcatgaatt 28017838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 23681149 - 23681249
Alignment:
Q  179 cctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaata 278  Q
    |||||||||||||| |||  ||||||||| || |||||||||||||| || | ||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  23681149 cctagagccagaaaatgttgtttcttaggctacaagtcaggtttcaagggttttgttctttttgatctacattctagagaaatctttatctctagaaata 23681248  T
Q  279 t 279  Q
    |    
T  23681249 t 23681249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 16990804 - 16990507
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| ||     
T  16990804 ctggtcatatgctgttttgcattcagtttttctcataaatagagtttcaactcctcttctcaaacataaatctccttatcatgttttatatgattcattg 16990705  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    |||||| |||||||||| || || ||||||||  | ||||||||||| |||||||||||||||||||| || | |||| ||||||||||||||||| |||    
T  16990704 cctgatattcattctttcaaagtttttggttgcctttgttatgcttctacacttcaagctcatagaacaaaattacaatctagagccagaaagtgtattt 16990605  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaattaata 298  Q
    ||||||| || ||||| || |||||||| || || || |||||  |  |||| |||||||||||||| || |||||| |||| || ||||||||||||    
T  16990604 tcttaggttacaagtctggattcaaaggttcagttctttttgacttacattccagagaaatctttgtttcaagaaatgttgttttccatgaattaata 16990507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 36732452 - 36732354
Alignment:
Q  179 cctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaat 277  Q
    |||||||||| ||| |||  ||||||||| || |||||||||||||| || | ||| || |||||| |  ||||||||||||||||| | |||||||||    
T  36732452 cctagagccataaaatgttgtttcttaggctacaagtcaggtttcaagggttttgttctttttgatttacattctagagaaatctttatatctagaaat 36732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 42139980 - 42140028
Alignment:
Q  180 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 228  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  42139980 ctagagccagaaagtcagttttcttaggatacaagttaggtttcaaagg 42140028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 26472244 - 26472407
Alignment:
Q  2 tggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattctttac 101  Q
    ||||||||||| ||| | ||| | |||||  | || ||||||||  |||| || ||||||||||| |||||||| |||||| |||| ||| |||| ||||    
T  26472244 tggtcatatgctgttattcatgctgttttcttaataaatagagtgcctacccctcttcttaaacaaaaatctccttatcaacttctttatgattccttac 26472343  T
Q  102 ctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatag 165  Q
    ||||  | ||||| || || || ||||||||  |||||| |||||| || ||||  ||||||||    
T  26472344 ctgacatacattccttcaaagtttttggttgtctgtgttttgcttctactcttcttgctcatag 26472407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 23903154 - 23903108
Alignment:
Q  179 cctagagccagaaagtgtgttttcttaggatataagtcaggtttcaa 225  Q
    ||||||||||||||||||  ||||||||| || ||||||||||||||    
T  23903154 cctagagccagaaagtgttgtttcttaggctacaagtcaggtttcaa 23903108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1215 - 922
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| ||     
T  1215 ctggtcatatgctgttttgcattcagtttttctcataaatagagtttcaactcctcttctcaaacataaatctccctatcatgttttatatgattcattg 1116  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    | |||| ||||||||||||| || ||||||||  | ||||||||||| |||||||||||||||| ||| || | |||| ||||||||||||||||| |||    
T  1115 cttgatattcattcttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagccagaaagtgtattt 1016  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaatt 294  Q
    ||||||| || ||||| || |||||||| ||  |  | |||||| |  |||| |||||||||||||| || |||||| |||| |||||||||||    
T  1015 tcttaggttacaagtctggattcaaaggctcaattgtttttgatttacattccagagaaatctttgtttccagaaatgttgtttttcatgaatt 922  T

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Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6342516 - 6342809
Alignment:
Q  1 ctggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattcttta 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||| ||||| |||| ||     
T  6342516 ctggtcatatgctgttttgcattcagtttttctcataaatagagtttcaactcctcttctcaaacataaatctccctatcatgttttatatgattcattg 6342615  T
Q  101 cctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttt 200  Q
    | |||| ||||||||||||| || ||||||||  | ||||||||||| |||||||||||||||| ||| || | |||| ||||||||||||||||| |||    
T  6342616 cttgatattcattcttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatataacaaaattacaatctagagccagaaagtgtattt 6342715  T
Q  201 tcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaatt 294  Q
    ||||||| || ||||| || |||||||| ||  |  | |||||| |  |||| |||||||||||||| || |||||| |||| |||||||||||    
T  6342716 tcttaggttacaagtctggattcaaaggctcaattgtttttgatttacattccagagaaatctttgtttccagaaatgttgtttttcatgaatt 6342809  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 28300361 - 28300229
Alignment:
Q  98 ttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtg 197  Q
    ||||||||  |||| ||||| || || |||||||| || ||||||  ||| || |||||||||||| |||| || | ||| | |||||| | ||||| ||    
T  28300361 ttacctgaccttcaatctttcaaagtttttggttgtttatgttattattcaactcttcaagctcatggaactaaattacagcatagagctataaagtatg 28300262  T
Q  198 ttttcttaggatataagtcaggtttcaaaggat 230  Q
    ||||||||||||| |||| ||||||||||||||    
T  28300261 ttttcttaggatacaagttaggtttcaaaggat 28300229  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 28511712 - 28511844
Alignment:
Q  98 ttacctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtg 197  Q
    ||||||||  |||| ||||| || || |||||||| || ||||||  ||| || |||||||||||| |||| || | ||| | |||||| | ||||| ||    
T  28511712 ttacctgaccttcaatctttcaaagtttttggttgtttatgttattattcaactcttcaagctcatggaactaaattacagcatagagctataaagtatg 28511811  T
Q  198 ttttcttaggatataagtcaggtttcaaaggat 230  Q
    ||||||||||||| |||| ||||||||||||||    
T  28511812 ttttcttaggatacaagttaggtttcaaaggat 28511844  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 28519476 - 28519428
Alignment:
Q  180 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 228  Q
    ||||||||| |||||  |||||||||||||| |||| ||||||||||||    
T  28519476 ctagagccacaaagtcagttttcttaggatacaagttaggtttcaaagg 28519428  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 3003853 - 3003949
Alignment:
Q  181 tagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaat 277  Q
    |||||||||||| |||  ||||||||| || |||||||||||||| || | ||| || |||||| |  ||||||||||||||||| |||||||||||    
T  3003853 tagagccagaaaatgttgtttcttaggctacaagtcaggtttcaagggttttgttctttttgatttacattctagagaaatctttatctctagaaat 3003949  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 38847079 - 38847025
Alignment:
Q  180 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgt 234  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  38847079 ctagagccagaaagtctgttttcttgggatacaagtcaggtttcaaaggctctgt 38847025  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 18481422 - 18481374
Alignment:
Q  180 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 228  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  18481422 ctagagccagaaagtcagttttcttaggatacaagttaggtttcaaagg 18481374  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 37738593 - 37738495
Alignment:
Q  179 cctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaat 277  Q
    |||||||||||||| |||  ||||||||| || || ||||||||||| || | ||| || |||||| |  ||||||||||||||||| |||||||||||    
T  37738593 cctagagccagaaaatgttgtttcttaggctacaaatcaggtttcaagggttttgttctttttgatttacattctagagaaatctttatctctagaaat 37738495  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 6531180 - 6531228
Alignment:
Q  180 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 228  Q
    ||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  6531180 ctagagccagaaaatttgttttcttgggatacaagtcaggtttcaaagg 6531228  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 52778125 - 52778195
Alignment:
Q  116 tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagc 186  Q
    ||||| ||||||||||| |||||||||||||| || |||||| |||| ||||| || |  |||||||||||    
T  52778125 tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc 52778195  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 55310276 - 55310566
Alignment:
Q  2 tggtcatatgccgttttgcattcagtttttctcatcaatagagtctctactccccttcttaaacacaaatctccatatcaagttctatataattctttac 101  Q
    ||||||||||| ||| | ||| | |||||  | || ||||||||  |||| || ||||||||||| |||||||| |||||| |||| ||| |||| ||||    
T  55310276 tggtcatatgctgttattcatgctgttttcttaataaatagagtgcctacccctcttcttaaacaaaaatctccttatcaacttctttatgattccttac 55310375  T
Q  102 ctgatgttcattcttttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgtttt 201  Q
    ||||  | ||||| || || || ||||||||  |||||| |||||| || ||||  ||||||||  | ||    ||| ||||||| ||||| | ||||||    
T  55310376 ctgacatacattccttcaaagtttttggttgtctgtgttttgcttctactcttcttgctcataggtcaaaacttcaatctagagcaagaaaatctgtttt 55310475  T
Q  202 cttaggatataagtcaggtttcaaaggatctgtgctctttgatcttgattctagagaaatctttgtctctagaaatattgtctttcatgaa 292  Q
    ||| || || |||||||| |  ||||| | ||| |||| ||||||||||   |||||||| ||| ||   |||||| |||| |||||||||    
T  55310476 cttgggttacaagtcaggatctaaaggctatgttctctatgatcttgataacagagaaatatttctcagcagaaatgttgtttttcatgaa 55310566  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 12285751 - 12285815
Alignment:
Q  122 gtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagc 186  Q
    ||||||||||| |||||||||||||| || |||||| |||| ||||| || |  |||||||||||    
T  12285751 gtgtttggttgtttgtgttatgcttctactcttcaatctcacagaacaaaattgcaacctagagc 12285815  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 19586546 - 19586494
Alignment:
Q  116 tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaac 168  Q
    ||||| ||||||||||| |||||||||||||| || |||||| |||| |||||    
T  19586546 tttaaagtgtttggttgcttgtgttatgcttctactcttcaatctcacagaac 19586494  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 21029395 - 21029347
Alignment:
Q  180 ctagagccagaaagtgtgttttcttaggatataagtcaggtttcaaagg 228  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  21029395 ctagagccagaaagtcagttttcttaggatacaagttaggtttcaaagg 21029347  T

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Target: scaffold0669 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 358 - 463
Alignment:
Q  116 tttaaggtgtttggttgattgtgttatgcttccacacttcaagctcatagaaccaagtaacaacctagagccagaaagtgtgttttcttaggatataagt 215  Q
    ||||| |||||||||||  | ||||| | ||| |||||| || ||||||||||||| | |||||||||||  | ||| | | |||| |||||||| ||||    
T  358 tttaaagtgtttggttgtgtatgttagggttcaacacttaaatctcatagaaccaaattacaacctagagatataaaatctatttttttaggatacaagt 457  T
Q  216 caggtt 221  Q
    ||||||    
T  458 caggtt 463  T

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