View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7302_high_6 (Length: 311)
Name: NF7302_high_6
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7302_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 44541228 - 44541437
Alignment:
| Q |
84 |
aaattaaagcatgggaaatccaatatccagatacaagatttgtgagattgaaggaaatacatgataaaagtgtgagattatacctctaaaaaatacaaga |
183 |
Q |
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| T |
44541228 |
aaattaaagcatgggaaatccaatatccagatacaagatttgtgagattgaaggaaatacatgataaaagtgtgagattatacctctaaaaaatacaaga |
44541327 |
T |
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| Q |
184 |
ttcgaaataatattcagagtaattcaaaatccaaaatagcatgggatttcctataaattaaaaactgtgagtttcattaaggaacacaaactaaaatcaa |
283 |
Q |
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| T |
44541328 |
ttcgaaataatatccagagaaattcaaaatccaaaatagcatgggatttcctataaattaaaaactgtgagtttcattaaggaacacaaactaaaatcaa |
44541427 |
T |
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| Q |
284 |
tggtcaattt |
293 |
Q |
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| T |
44541428 |
tggtcaattt |
44541437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 36906113 - 36906051
Alignment:
| Q |
47 |
tccttattggaatttcttcatcaaaattttgtatgctaaattaaagcatgggaaatccaatat |
109 |
Q |
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| T |
36906113 |
tccttattggaatttctacatcaaacttttgtatgcgaatttttaacatgggaaatccaatat |
36906051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 44541194 - 44541225
Alignment:
| Q |
21 |
ccacctcgttgcaccttctatatacgtcctta |
52 |
Q |
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| T |
44541194 |
ccacctcgttgcaccttctatatacgtcctta |
44541225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 472715 - 472778
Alignment:
| Q |
230 |
tttcctataaattaaaaactgtgagtttcattaaggaacacaaactaaaatcaatggtcaattt |
293 |
Q |
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| T |
472715 |
tttcctataatttacaaactgtgagctttgttaaggaacacaaactaaaattaatggtcaattt |
472778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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