View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7302_low_1 (Length: 637)

Name: NF7302_low_1
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7302_low_1
NF7302_low_1
[»] chr2 (9 HSPs)
chr2 (116-621)||(7381681-7382184)
chr2 (13-89)||(7381605-7381681)
chr2 (121-223)||(21603953-21604055)
chr2 (122-301)||(34392079-34392257)
chr2 (122-222)||(37357997-37358097)
chr2 (141-223)||(23863878-23863958)
chr2 (129-209)||(4775636-4775716)
chr2 (147-223)||(4779605-4779681)
chr2 (170-221)||(41095863-41095914)
[»] chr4 (17 HSPs)
chr4 (124-223)||(22343334-22343433)
chr4 (129-300)||(12473706-12473876)
chr4 (129-300)||(12528115-12528285)
chr4 (129-223)||(33249449-33249543)
chr4 (122-223)||(21260789-21260890)
chr4 (122-223)||(51811909-51812010)
chr4 (122-204)||(55590477-55590559)
chr4 (129-223)||(35869646-35869740)
chr4 (129-223)||(52012780-52012874)
chr4 (129-213)||(34829168-34829252)
chr4 (129-221)||(52910126-52910218)
chr4 (129-223)||(9799438-9799532)
chr4 (129-223)||(49999663-49999757)
chr4 (147-220)||(46719950-46720023)
chr4 (129-223)||(47943160-47943255)
chr4 (252-294)||(35781033-35781075)
chr4 (252-300)||(55590595-55590643)
[»] scaffold0032 (1 HSPs)
scaffold0032 (122-223)||(34189-34290)
[»] chr3 (17 HSPs)
chr3 (120-294)||(44380247-44380420)
chr3 (129-223)||(50934502-50934596)
chr3 (129-223)||(47186177-47186271)
chr3 (129-223)||(47426352-47426446)
chr3 (129-223)||(31187145-31187239)
chr3 (131-220)||(33509684-33509773)
chr3 (129-223)||(42664675-42664769)
chr3 (129-223)||(34029366-34029460)
chr3 (122-223)||(17466268-17466369)
chr3 (129-223)||(39498744-39498838)
chr3 (122-195)||(32319468-32319541)
chr3 (140-223)||(37742738-37742821)
chr3 (122-223)||(35094541-35094644)
chr3 (122-193)||(10179868-10179939)
chr3 (129-180)||(21963073-21963124)
chr3 (122-162)||(10123242-10123282)
chr3 (252-288)||(19619222-19619258)
[»] chr5 (14 HSPs)
chr5 (132-309)||(33858528-33858704)
chr5 (122-223)||(39570118-39570219)
chr5 (129-223)||(29989964-29990058)
chr5 (124-223)||(19357336-19357435)
chr5 (129-223)||(13015383-13015477)
chr5 (129-223)||(38010689-38010783)
chr5 (122-223)||(11607609-11607710)
chr5 (129-222)||(13086755-13086848)
chr5 (129-223)||(1826261-1826355)
chr5 (129-223)||(13421085-13421179)
chr5 (129-223)||(13478120-13478214)
chr5 (121-223)||(9827782-9827884)
chr5 (143-223)||(33271630-33271710)
chr5 (175-223)||(37881189-37881237)
[»] chr7 (7 HSPs)
chr7 (122-223)||(35341531-35341632)
chr7 (129-222)||(48250156-48250249)
chr7 (131-220)||(31306951-31307041)
chr7 (171-300)||(32694569-32694697)
chr7 (129-191)||(40856394-40856456)
chr7 (123-300)||(48072385-48072559)
chr7 (129-223)||(40893116-40893211)
[»] chr1 (13 HSPs)
chr1 (120-223)||(32676129-32676232)
chr1 (129-223)||(8809715-8809809)
chr1 (129-223)||(2569039-2569133)
chr1 (122-220)||(25161304-25161402)
chr1 (129-223)||(29119399-29119493)
chr1 (129-223)||(6223053-6223147)
chr1 (131-208)||(7214501-7214578)
chr1 (122-223)||(8462124-8462224)
chr1 (129-300)||(46435464-46435622)
chr1 (156-219)||(3688917-3688980)
chr1 (129-223)||(35998254-35998348)
chr1 (129-186)||(16679811-16679867)
chr1 (168-220)||(8555470-8555522)
[»] chr6 (6 HSPs)
chr6 (129-223)||(34245569-34245663)
chr6 (129-300)||(5403875-5404045)
chr6 (129-220)||(11113558-11113649)
chr6 (120-223)||(32644912-32645014)
chr6 (129-223)||(1211919-1212013)
chr6 (129-181)||(11753169-11753221)
[»] chr8 (8 HSPs)
chr8 (134-223)||(18168392-18168481)
chr8 (134-223)||(18631949-18632038)
chr8 (122-223)||(41179638-41179739)
chr8 (129-300)||(24337829-24337999)
chr8 (129-223)||(1514805-1514899)
chr8 (135-223)||(4708382-4708470)
chr8 (123-223)||(11254103-11254202)
chr8 (129-223)||(32825910-32826004)
[»] scaffold0229 (1 HSPs)
scaffold0229 (129-223)||(13081-13175)
[»] scaffold0519 (1 HSPs)
scaffold0519 (123-223)||(11191-11290)
[»] scaffold0263 (2 HSPs)
scaffold0263 (157-223)||(23174-23240)
scaffold0263 (129-186)||(23095-23152)
[»] scaffold0041 (1 HSPs)
scaffold0041 (129-223)||(73073-73168)


Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 116 - 621
Target Start/End: Original strand, 7381681 - 7382184
Alignment:
Q  116 ttttatggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttat 215  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  7381681 ttttatggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttat 7381780  T
Q  216 ttgatatannnnnnnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatctgtattttactagat 315  Q
    ||||||||        ||||| |||||||| | || ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  7381781 ttgatatatttttt--aaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagttctatccgtattttactagat 7381878  T
Q  316 tagtggggtccatgtatatatttaataatgtgccaacaagaatggttggcttaaggaaactttagttttgaggatgggtggatattgttttgtttgttgt 415  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7381879 tagtggggtccatgtatatatttattaatgtgccaacaagaatggttggcttaaggaaactttagttttgaggatgggtggatattgttttgtttgttgt 7381978  T
Q  416 ttggatctatatggaaggattattactgtttaaatgtacttttgtggagatattaaagaaatttcttttattaacttattctttggttataatcactttg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7381979 ttggatctatatggaaggattattactgtttaaatgtacttttgtggagatattaaagaaatttcttttattaacttattctttggttataatcactttg 7382078  T
Q  516 ccaatcattttgcatgcatttgattttgattccaattgttttatcctgtactcataacagttttgtttttgatccttgtctgggaggaaacttaatccat 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7382079 ccaatcattttgcatgcatttgattttgattccaattgttttatcctgtactcataacagttttgttttggatccttgtctgggaggaaacttaatccat 7382178  T
Q  616 gttatt 621  Q
    ||||||    
T  7382179 gttatt 7382184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 7381605 - 7381681
Alignment:
Q  13 attatacttagggggtgcttgatattcaatttgtgattacttttatttttatgaagttaatttgtgattacttattt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7381605 attatacttagggggtgcttgatattcaatttgtgattacttttatttttatgaagataatttgtgattacttattt 7381681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 21603953 - 21604055
Alignment:
Q  121 tggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    ||||||| |||||||||||||||||||| ||||||||||||  |||||||||||| ||||| |||| |||||||||||||||||||||  ||||||||||    
T  21603953 tggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgat 21604052  T
Q  221 ata 223  Q
    |||    
T  21604053 ata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 122 - 301
Target Start/End: Complemental strand, 34392257 - 34392079
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||||||||||||| ||||| ||||||||||||  |||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgata 34392158  T
Q  222 tannnnnnnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatct 301  Q
    ||        |||||||||| || ||  | || | ||||||| |||||||||| |||||||| |||| ||||| ||||||    
T  34392157 ta-tttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatct 34392079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 37358097 - 37357997
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| ||||||||| |||||||||| ||||| ||||||  |||||| |||||||||||||||| || |||||||||||||||||| |||||||| |||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaata 37357998  T
Q  222 t 222  Q
    |    
T  37357997 t 37357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 23863958 - 23863878
Alignment:
Q  141 ttaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||| |||||||||||  |||||  ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  23863958 ttaaggtaccaatggtatat--tattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata 23863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 4775636 - 4775716
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaatt 209  Q
    |||| |||||||||||| || ||||| |||||||||||| ||||||||| ||| |||  ||||||| ||||||||| ||||    
T  4775636 acttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaatt 4775716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 4779605 - 4779681
Alignment:
Q  147 tatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||| |||||||  ||||| || ||| |||||| | | || |||||||||||||||||| ||||||||||||||    
T  4779605 tatcaatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatata 4779681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 41095914 - 41095863
Alignment:
Q  170 caattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||||||||   ||| ||||||||||||||||||||| ||||||||||||    
T  41095914 caattagagtgcaccacctaccaatgttactttataaatgctttatttgata 41095863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 22343334 - 22343433
Alignment:
Q  124 attcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatata 22343433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 129 - 300
Target Start/End: Original strand, 12473706 - 12473876
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnn 228  Q
    |||||| ||||||||||||| ||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||| || ||||||||||||||         
T  12473706 acttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata-tttt 12473804  T
Q  229 nnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
       |||||||||| || || || |||| |||||| ||||||||||| |||||||| |||| ||||| |||||    
T  12473805 tttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatc 12473876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 129 - 300
Target Start/End: Original strand, 12528115 - 12528285
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnn 228  Q
    |||||| ||||||||||||| ||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||| || ||||||||||||||         
T  12528115 acttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata-tttt 12528213  T
Q  229 nnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
       |||||||||| || || || |||| |||||| ||||||||||| |||||||| |||| ||||| |||||    
T  12528214 tttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatc 12528285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 33249543 - 33249449
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||||||||||||||  |||||||||||  |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  33249543 acttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatata 33249449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 21260789 - 21260890
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||| | ||||||||||||| ||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 21260888  T
Q  222 ta 223  Q
    ||    
T  21260889 ta 21260890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 51811909 - 51812010
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| ||| |||||||||||||||||||| | |||||||||||| ||||||||||| || ||| |||||||||||||||||||||| ||| |||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgata 51812008  T
Q  222 ta 223  Q
    ||    
T  51812009 ta 51812010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 55590477 - 55590559
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttat 204  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 35869740 - 35869646
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||| | |||| ||| ||||||||||||| |||||||  |||||||||||||    
T  35869740 acttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata 35869646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 52012780 - 52012874
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| | |||||| ||| |||||||||||||||||||||  |||||||||||||    
T  52012780 acttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 34829252 - 34829168
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattcttt 213  Q
    |||| ||||| ||||||||| ||||| ||||||| | || ||||||| |||||||||| ||||||||||||||||||||| ||||    
T  34829252 acttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 52910218 - 52910126
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    ||||||||||||| | |||| ||||| ||||||  |||| ||||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||    
T  52910218 acttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 9799532 - 9799438
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||| ||||||||||||| ||||| ||||||  |||||||||  ||| |||| ||| |||||||||||||||||||||  ||||||| |||||    
T  9799532 acttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 49999757 - 49999663
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||||||| ||| ||  |||| ||| | | ||||  ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  49999757 acttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 46719950 - 46720023
Alignment:
Q  147 tatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    |||||||| ||||||  |||||||||| |||||||| ||| ||| ||||||||||||||||| |||||||||||    
T  46719950 tatcaatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 47943160 - 47943255
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattatt-gaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||||||||||  || ||||| |||||| |||| ||||||| | | |||| ||| ||||||| ||| |||||||||  |||||||||||||    
T  47943160 acttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatata 47943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 35781033 - 35781075
Alignment:
Q  252 cattttaattgggcaatggtataaaccattatagtacgcaagt 294  Q
    |||| |||||||||||||||||| |||||||| ||||||||||    
T  35781033 cattctaattgggcaatggtatataccattatggtacgcaagt 35781075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 55590595 - 55590643
Alignment:
Q  252 cattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
    |||| |||||||||||||| ||| |||||||| |||||||||| |||||    
T  55590595 cattctaattgggcaatggaatataccattatggtacgcaagtgctatc 55590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 34189 - 34290
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||  |||||||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgata 34288  T
Q  222 ta 223  Q
    ||    
T  34289 ta 34290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 120 - 294
Target Start/End: Original strand, 44380247 - 44380420
Alignment:
Q  120 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 219  Q
    |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || |||| ||||||||||||| ||||||||||    
T  44380247 atggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttga 44380346  T
Q  220 tatannnnnnnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagt 294  Q
    ||||        |||||||||| ||  | || |||| ||||||| |||||||||| |||||||| |||| |||||    
T  44380347 tata-cttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagt 44380420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 50934502 - 50934596
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  50934502 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 47186177 - 47186271
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||| ||||||  |||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  47186177 acttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 47426352 - 47426446
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| |||| |||||||  |||| |||||||||||||||||| || ||||||||||||||| || ||||||||||||||    
T  47426352 acttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatata 47426446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 31187239 - 31187145
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||| ||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  31187239 acttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 33509684 - 33509773
Alignment:
Q  131 ttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    ||||||||||||||||||  ||| |||||||| ||||||||||||||||||| ||| ||||||| |||||||||| || |||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgat 33509773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 42664675 - 42664769
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||| | ||||||  |||||||||| |||||||| ||| ||||||||||| |||||||||  |||||||||||||    
T  42664675 acttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 34029460 - 34029366
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||| ||||||||||||| ||||| ||||||  ||||| |||| |||||||| ||| ||| |||||||||||||||||  |||||||||||||    
T  34029460 acttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 17466268 - 17466369
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| | |||||||| ||| |  |||||||||||||||| ||||  ||||||||||||||||| || ||||||||||||||||||  |||| ||||||    
T  17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgata 17466367  T
Q  222 ta 223  Q
    ||    
T  17466368 ta 17466369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 39498838 - 39498744
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||| ||| ||||| ||||||||||||  |||||| |||||||||| || | |||||| |||||||||  ||||||| |||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 32319541 - 32319468
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 195  Q
    |||||| |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||| ||| ||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 37742738 - 37742821
Alignment:
Q  140 attaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||| ||||||||||||| ||||  |||||||||| || ||| |||||||||||| |||  ||| ||||||||||||||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatata 37742821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 35094541 - 35094644
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaatta--gagtgtgtcacttaccaatgttactttataaattctttatttga 219  Q
    |||||| ||||  |||||||||| ||| || |||||||||  |||||| |||||  |||| || ||| |||||||||||||||||||||  |||||||||    
T  35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttga 35094640  T
Q  220 tata 223  Q
    ||||    
T  35094641 tata 35094644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaa 193  Q
    |||||| |||||||||||||||| ||| ||||||||||||  ||||  ||||||||||||| ||| ||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 21963124 - 21963073
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtg 180  Q
    |||| ||||||||||||||||||||| ||||||  |||||||||| ||||||    
T  21963124 acttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 10123282 - 10123242
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatat 162  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatat 10123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 19619222 - 19619258
Alignment:
Q  252 cattttaattgggcaatggtataaaccattatagtac 288  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  19619222 cattttaattgggcaatggtatataccattatggtac 19619258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 132 - 309
Target Start/End: Complemental strand, 33858704 - 33858528
Alignment:
Q  132 tgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnnnnn 231  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||||  |||||||||||||            
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ctttttt 33858606  T
Q  232 aaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatctgtatttta 309  Q
    |||||||||| ||  | || |||| |||||||||||||||||| |||||||| |||| ||||| ||||| || |||||    
T  33858605 aaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatccgtgtttta 33858528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 39570219 - 39570118
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| ||||||||| |||||| ||||||||||||||||  |||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 39570120  T
Q  222 ta 223  Q
    ||    
T  39570119 ta 39570118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 29989964 - 29990058
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  29989964 acttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 19357435 - 19357336
Alignment:
Q  124 attcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||| ||||||||||||||| |||| ||||||||||||  |||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata 19357336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 13015383 - 13015477
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  13015383 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 38010783 - 38010689
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||| ||||||  |||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  38010783 acttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 11607710 - 11607609
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||||| ||||||||||||| ||||||||||||  |||||||||||| |||||| ||| ||||||| |||||||||||||  |||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgata 11607611  T
Q  222 ta 223  Q
    ||    
T  11607610 ta 11607609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 13086755 - 13086848
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 222  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  13086755 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 1826261 - 1826355
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||| ||| ||||||||||||  ||||  ||||||||||||||||| ||||||| ||||||| || || ||||||||||||||    
T  1826261 acttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatata 1826355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 13421179 - 13421085
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||||||||| ||||||  ||||| |||| ||||||| |||  || |||||||||||||||||| |||||||| |||||    
T  13421179 acttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 13478214 - 13478120
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||| | ||||| ||||||  |||||||||| |||||||| ||| ||||| |||||||||||||||  |||||||||||||    
T  13478214 acttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 9827782 - 9827884
Alignment:
Q  121 tggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    ||||||| |||||||||||||||||||| ||||||||||||   ||   ||||||||||||  ||| ||||||| |||||||||||||  ||||||||||    
T  9827782 tggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgat 9827881  T
Q  221 ata 223  Q
    |||    
T  9827882 ata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 33271630 - 33271710
Alignment:
Q  143 aaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||| ||||| ||||||| |||| |||||||||||||||||  || ||||||||||| |||||| ||||||||||||||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatata 33271710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 37881189 - 37881237
Alignment:
Q  175 agagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  37881189 agagtgtgccacataccaatgttactttataaatattttatttgatata 37881237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 35341531 - 35341632
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||||||||||||||||||| ||||| ||||||  |||||||||||| |||||| ||| |||||||||||||||||||||  |||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgata 35341630  T
Q  222 ta 223  Q
    ||    
T  35341631 ta 35341632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 48250156 - 48250249
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 222  Q
    |||||||||||||||||||| ||||| ||||||| ||||  ||||||||||||| ||| |||||||||||||||||| || |||||||||||||    
T  48250156 acttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat 48250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  131 ttgtgtaccattaaggtatcaatggtatatattattgaccaatt-agagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    |||||||||||||| ||||||||| ||||||| |||| |||||| | ||||||  || ||||||||||||||||||||| |||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 32694697 - 32694569
Alignment:
Q  171 aattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnnnnnaaagggtgtgtcatataacgcattttaattgggcaatgg 270  Q
    |||||||||||  ||  || |||||||||||||||||||||||||||||||||        |||||||||| ||  | || |||| ||||| ||||||||    
T  32694697 aattagagtgtcccatctatcaatgttactttataaattctttatttgatata-tttttttaaagggtgtgccacgtgacacattctaattaggcaatgg 32694599  T
Q  271 tataaaccattatagtacgcaagttctatc 300  Q
    |||| ||||||||||||| ||||| |||||    
T  32694598 tatataccattatagtacacaagtgctatc 32694569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 40856394 - 40856456
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttacc 191  Q
    |||| |||| ||||||||||  |||| ||||||||||||| ||||||||||||||||| ||||    
T  40856394 acttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 300
Target Start/End: Original strand, 48072385 - 48072559
Alignment:
Q  123 gattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 222  Q
    ||||| |||||||||| ||||||||| |||| |||||    ||||| ||||||||||||| ||| |  |||||||| |||||||||  |||||||||| |    
T  48072385 gattccacttgtgtactattaaggtaccaatagtatacc--attgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgt 48072482  T
Q  223 annnnnnnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
    |        |||||||||| ||  |  | |||| |||||||||||||||||| |||||||| |||| ||||| |||||    
T  48072483 a-tttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatc 48072559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 40893211 - 40893116
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattc-tttatttgatata 223  Q
    |||||| |||||| || |||| |||||||||||  ||||  |||||||| ||| |||  || |||||||||||||||||| | |||||||||||||    
T  40893211 acttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 32676129 - 32676232
Alignment:
Q  120 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 219  Q
    |||||||| |||||||||||||||||||| ||||||||||||  |||| ||||||||| ||   ||| ||||||||||||||||||||| ||||||||||    
T  32676129 atggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttga 32676228  T
Q  220 tata 223  Q
    ||||    
T  32676229 tata 32676232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 8809809 - 8809715
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  8809809 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 2569039 - 2569133
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||||||||||| |||  |||||||||||||| ||| |||||||||||| |||  ||| ||||||||||||||    
T  2569039 acttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata 2569133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 25161304 - 25161402
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    |||||| |||||||||||||||| || |||||||||||||  |||||||||||| |||||| ||| || ||||||||||||||||||  ||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 29119493 - 29119399
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||| || || |||||||||||| || ||||||||||||||    
T  29119493 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatata 29119399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 6223053 - 6223147
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||| ||||||||| ||||||| ||||| ||||||  ||||||||  || |||||||| ||||||| |  |||||||||||||    
T  6223053 acttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatata 6223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 7214578 - 7214501
Alignment:
Q  131 ttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaat 208  Q
    ||||||||||||||||||  ||| |||||||||||||  ||||||||||||||||| || | || |||||||||||||    
T  7214578 ttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttataaat 7214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 8462124 - 8462224
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||||||||  ||||| ||| ||||||||||||| ||||| |||||| |||||| ||| ||||||||||| |||||||||  ||||||| |||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaata 8462222  T
Q  222 ta 223  Q
    ||    
T  8462223 ta 8462224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 46435622 - 46435464
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnn 228  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||| |||||            ||||||| || ||||||||||||||         
T  46435622 acttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcac------------ctttatagatgctttatttgatata-tatt 46435536  T
Q  229 nnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
       ||||||||||||| || || |||| |||||||||||||||||| |||||||| |||| ||||| |||||    
T  46435535 tttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctatc 46435464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  156 tatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 219  Q
    ||||||| ||||||||||||||||||   || |||||||||||||||||||||  |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 35998254 - 35998348
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||| ||||||||||||| ||||| ||||||  |||||  ||| |||||||| ||| || |||||||| ||||||| |  ||||||| |||||    
T  35998254 acttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatata 35998348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 16679867 - 16679811
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    |||||||||||||||||||| ||||| |||||| ||||| ||||||||  ||||||||    
T  16679867 acttgtgtaccattaaggtaccaatgttatatactattg-ccaattaggatgtgtcac 16679811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 8555470 - 8555522
Alignment:
Q  168 accaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    |||||||| | |||||||| ||||||||||| |||||||||  ||||||||||    
T  8555470 accaattaaaatgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 34245569 - 34245663
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||||||||||||||| |||| ||||||  |||||||||| | |||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  34245569 acttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 5404045 - 5403875
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnn 228  Q
    ||||||||||||||||||||  |||||||||||||||||  || ||||||| || ||| |||||||||||||||||| ||  |||||||||||||         
T  5404045 acttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatata-tttt 5403947  T
Q  229 nnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
       |||||| || ||| || || |||| ||||||| |||||||||| |||||||| |||| ||||| |||||    
T  5403946 tttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatc 5403875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 11113558 - 11113649
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 220  Q
    |||||||||||||||||||| ||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||| ||| | |||||||||||    
T  11113558 acttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 32645014 - 32644912
Alignment:
Q  120 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 219  Q
    |||||||| || |||||||||||||| |||| || |||||||| |||| |||||||  ||||||||| ||| |||||||||||| |||| |||||||||     
T  32645014 atggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgt 32644916  T
Q  220 tata 223  Q
    ||||    
T  32644915 tata 32644912  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 1212013 - 1211919
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||| ||||| ||| |  ||||||||||||||  || ||||||||||||||    
T  1212013 acttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatata 1211919  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 11753169 - 11753221
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgt 181  Q
    |||||||||||||||||||| ||||||||||||  || | |||||||||||||    
T  11753169 acttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgt 11753221  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  134 tgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||  ||| ||||||| ||||||||||||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  134 tgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||  ||| ||||||| ||||||||||||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 41179739 - 41179638
Alignment:
Q  122 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 221  Q
    |||||| |||||||||||||||||||| ||||| ||||||| |||| ||||||| |||||||||| |||| ||||||||||||||||  ||||||| |||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaata 41179640  T
Q  222 ta 223  Q
    ||    
T  41179639 ta 41179638  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 24337999 - 24337829
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatatannnnn 228  Q
    |||||||||| ||||||||| ||||||||||||  || |  ||||||||||||| ||  |||||||||||||||||| || ||||||||||||||         
T  24337999 acttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatata-tatt 24337901  T
Q  229 nnnaaagggtgtgtcatataacgcattttaattgggcaatggtataaaccattatagtacgcaagttctatc 300  Q
       |||||||||| || ||| | |||| ||||||| |||||||||| |||||||| |||| ||||| |||||    
T  24337900 tttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatc 24337829  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 1514805 - 1514899
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||| ||||||  ||||| |||| |||||||  ||| |||||||||||||||||||||  |||||||||||||    
T  1514805 acttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 4708470 - 4708382
Alignment:
Q  135 gtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||| ||||||| |||||| |||||| ||   ||||||| |||||||||| |||||||||||||||||||||  |||||||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 4708382  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 11254202 - 11254103
Alignment:
Q  123 gattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 222  Q
    ||||| ||||||||||||||||  || ||||| ||||||| |||||||| ||| ||| |  ||| |||||||||||||||||||||  ||||||||||||    
T  11254202 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11254104  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 32826004 - 32825910
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||| ||||||||| | ||||  |||| ||||||||||| |||||| || |||||||| ||||||  |  |||||||||||||    
T  32826004 acttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatata 32825910  T

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Target: scaffold0229 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 13175 - 13081
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||| ||||| ||| |  ||||||||||||||  || ||||||||||||||    
T  13175 acttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatata 13081  T

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Target: scaffold0519 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 11191 - 11290
Alignment:
Q  123 gattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 222  Q
    ||||| ||||||||||||||||  || ||||| ||||||| |||||||| ||| ||| |  ||| |||||||||||||||||||||  ||||||||||||    
T  11191 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11289  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  157 atatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 223  Q
    |||||| |||| |||||||||||||| ||| ||||||| |||||||||||||  |||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

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Target: scaffold0263; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 23095 - 23152
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 186  Q
    ||||||||| |||||||||| |||||||||||| ||||| |||||||| || ||||||    
T  23095 acttgtgtatcattaaggtaccaatggtatatactattggccaattagggtctgtcac 23152  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 73073 - 73168
Alignment:
Q  129 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattc-tttatttgatata 223  Q
    |||||| |||||| || |||| |||||||||||  ||||  |||||||| ||| |||  || |||||||||||||||||| | |||||||||||||    
T  73073 acttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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