View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7302_low_2 (Length: 424)
Name: NF7302_low_2
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7302_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 43128819 - 43128424
Alignment:
| Q |
13 |
ggacatcacaaacagcagaaatcgcgccaaaaccaa-gatcatgggacacccacgcaaacagatggcaccaatacaatagatgaaacaaatatgctgcag |
111 |
Q |
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| T |
43128819 |
ggacagcacaaacagcagaaatcgcgccaaaaccaaagatcatgggacacccacgcaaacagatagcaccaatacaatagatgaaacaaatatgctgcag |
43128720 |
T |
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| Q |
112 |
actaccaacaaatcaacactacaaccaagataccatatacacctcctgtaaacgacatacaaatgaaggacagaaacttaaacatgcctcttccaagtag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43128719 |
actaccaacaaatcaacactacaaccaagataccatatacacctcctgtaaacgacatacaaatgaaggacagaaacttaaacatgcctcttccaagtag |
43128620 |
T |
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| Q |
212 |
aaaacaagcttagcaaaagttttcacaaagctgaaaaacatgcaggcacataatcaaagacaaaaaccccgtccaccattccaagacacaagctgagtga |
311 |
Q |
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| T |
43128619 |
aaaaccagcttagcaaaacttttcacaaagctgaaaaacatgcaggcacataatcaaagacaaaaaccccatccaccattccaagacacaagctgagtga |
43128520 |
T |
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| Q |
312 |
atcacaagcctaatctgcagaacaaccaatgaccaccctaaatgagcagcttatgccgggaaagaatttgcagaaaaattaccactacatgcctcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43128519 |
atcacaagcctaatctgcagaacaaccaatgaccaccctaaatgagcagcttatgccgggaaagaatttgcagaaaaattaccactacatgcctcc |
43128424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 7190149 - 7190231
Alignment:
| Q |
183 |
agaaacttaaacatgcctcttccaagtagaaaacaagcttagcaaaagttttcacaaagctgaaaaacatgcaggcacataat |
265 |
Q |
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||||||||||||||| |||||||||||| ||| || |||||||| || | ||||| ||||||||| ||||||||||||||||| |
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| T |
7190149 |
agaaacttaaacatgactcttccaagtataaagcatgcttagcataactcttcactaagctgaaacacatgcaggcacataat |
7190231 |
T |
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