View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7302_low_3 (Length: 375)
Name: NF7302_low_3
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7302_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 48 - 361
Target Start/End: Original strand, 42126544 - 42126872
Alignment:
| Q |
48 |
gagtattcaatggttcttgattagccgaagaactagctttgtttctagaaatcacgggnnnnnnnttcttcgtcctataaaacatagcaatgactttgtg |
147 |
Q |
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| T |
42126544 |
gagtattcaatggttcttgattagccgaagaactagctttgtttctagaaatcacgggaaaaaaattcttcgtcctataaaacataacaatgactttgtg |
42126643 |
T |
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| Q |
148 |
agcataacaaacaaacaattcaatggccaattaagagctattccttccatcaaaattgtgagcataacaaacaaaacggtgatgcattcg---------- |
237 |
Q |
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| T |
42126644 |
agtataacaaacaaacaattcaatggccaattaagagctattccttccatcaaaattgtgagcataacaaacaaaacggtgatgcattcgattaactgaa |
42126743 |
T |
|
| Q |
238 |
-----atttactgaagtttaattttctcagcagccataacaaacaacaaatgctcacaagccatgaaaagagtcaacacnnnnnnnttatgagcagccat |
332 |
Q |
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| T |
42126744 |
gtttaatttactggagtttaattttctcagcagccataacaaacaacaaatgctcacaagccatgaaaagagtcgacacaaaaaaattatgagcagccat |
42126843 |
T |
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| Q |
333 |
aactaacaaattctctttaatcctggagt |
361 |
Q |
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| T |
42126844 |
aacaaacaaattctctttaatcctggagt |
42126872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 22875826 - 22875746
Alignment:
| Q |
51 |
tattcaatggttcttgattagccgaagaactagctttgtttctagaaatcacgggnnnnnnnttcttcgtcctataaaaca |
131 |
Q |
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| T |
22875826 |
tattcgatggttcttgattagccgaagaactagctttgtctctagaaagcacgggaaaaaatttcttcatcctataaaaca |
22875746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42126484 - 42126532
Alignment:
| Q |
18 |
ataacttcatgtcgtggttcacttggatg-tgagtattcaatggttctt |
65 |
Q |
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| T |
42126484 |
ataacttcatgtcgtggttcacttggatgttgagtattcaatggttctt |
42126532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 34190309 - 34190419
Alignment:
| Q |
113 |
ttcttcgtcctataaaacatagcaatgactttgtgagcataacaaacaaacaattcaatggccaattaagagctattccttccatcaaaattgtgagcat |
212 |
Q |
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| T |
34190309 |
ttcttcatcctataaaatataacaatgacattgtgagcataacaaacaaacaattcaatggccaattaagagttactccttccatcaaaattgtgagcgt |
34190408 |
T |
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| Q |
213 |
aacaaacaaaa |
223 |
Q |
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| T |
34190409 |
aacaaacaaaa |
34190419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 8615416 - 8615496
Alignment:
| Q |
120 |
tcctataaaacatagcaatgactttgtgagcataacaaacaaacaattcaatggccaattaagagctattccttccatcaa |
200 |
Q |
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| T |
8615416 |
tcctataaaacataacaatgactttgtgagcataacaaacaaacaattcaatggccaattaagagttactccttccatcaa |
8615496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 26460003 - 26460051
Alignment:
| Q |
57 |
atggttcttgattagccgaagaactagctttgtttctagaaatcacggg |
105 |
Q |
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| T |
26460003 |
atggttcttgattaaccgaagaactagctttgtctcttgaaagcacggg |
26460051 |
T |
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