View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7302_low_4 (Length: 363)
Name: NF7302_low_4
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7302_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 23639992 - 23639666
Alignment:
| Q |
18 |
gattggaagaatgtaaatgatgaaaatattgatcatatgataaaagaagcaagcttgcaagagctagaagaaaaatcaaagactcttgcaagttgtacct |
117 |
Q |
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| T |
23639992 |
gattggaagaatgtaaatgatgaaaatattgatcatatgataaaagtagcaagcttgcaagagctagaagaaaaatcaaagactcttgcaagttgtacct |
23639893 |
T |
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| Q |
118 |
atgaggagaacacatcatggggaaaagaggtcacactcacctttcaaaacttatataacnnnnnnngtcattcacttcttcatatattcataaatgtatg |
217 |
Q |
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| T |
23639892 |
atgaggaaaacacatcatggggaaaagaggtcacactcacctttcaaaaattatataactttttttgtcattcacttcttcatatattcataaatgtatg |
23639793 |
T |
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| Q |
218 |
aatatttgattgcagatgggactactatatggttgtgttgtggaggatgtaatgacaggattatcaattttatgcgaaggatggaaatcagtattctata |
317 |
Q |
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| T |
23639792 |
aatatttgattgcagatgggactactatatggttgtgttgtggaggatgtaataacaggattatcaattttatgcaaaggatggaaatcagtattctata |
23639693 |
T |
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| Q |
318 |
atccaacaagaaaagctttcttgggtt |
344 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
23639692 |
atcctacaagaaaagctttcttgggtt |
23639666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 23627529 - 23627390
Alignment:
| Q |
18 |
gattggaagaatgtaaatgatgaaaatattgatcatatgataaaagaagcaagcttgcaagagctagaagaaaaatcaaagactcttgcaagttgtacct |
117 |
Q |
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| T |
23627529 |
gattggaagaatgcaaatgatgaaaatattgatcatatgataaaagaagtaagcttgcaagagctagaagaaaaatcaaagactcttgcaagttgtacct |
23627430 |
T |
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| Q |
118 |
atgaggagaacacatcatggggaaaagaggtcacactcac |
157 |
Q |
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| T |
23627429 |
acgaggaaaacacatcatggggaaaagaggtcacaatcac |
23627390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 209 - 344
Target Start/End: Complemental strand, 23626709 - 23626572
Alignment:
| Q |
209 |
aaatgtatgaata--tttgattgcagatgggactactatatggttgtgttgtggaggatgtaatgacaggattatcaattttatgcgaaggatggaaatc |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||| |
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| T |
23626709 |
aaatgtatgaatacttttgattgcagatgggactactatatggttgtgtagtggaggatgtaataacaggattatatattttatgtaaaggatggaaatc |
23626610 |
T |
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| Q |
307 |
agtattctataatccaacaagaaaagctttcttgggtt |
344 |
Q |
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| T |
23626609 |
agtatattataatccaacaaggagacctttcttaggtt |
23626572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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