View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7302_low_6 (Length: 334)
Name: NF7302_low_6
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7302_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 34549670 - 34549973
Alignment:
| Q |
18 |
aagttgatatattcaattacacaaatagctggaatgggttactgttttggcttttttgaatgccatagttgaaatggatcacttggtcttatcgttactc |
117 |
Q |
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| T |
34549670 |
aagttgatatattcaattacacaaatagctggaatgggttacttttttggcttttttgaatgccatagttgaaatgga---cttggtcttatcgttactc |
34549766 |
T |
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| Q |
118 |
atgtttcccatgacaattttttcttnnnnnnntgaccttatgctgcatgctcttatattaatattcgttcatatatattactttctcattctcacaaaaa |
217 |
Q |
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| T |
34549767 |
atgtttcccatgacaattttttcttaaaaaaatgaccttatgctgcacgctcttatattaatattcgttcatatatattactttctcattctcacaaaaa |
34549866 |
T |
|
| Q |
218 |
ttatcatagtagattatttcacacaaagcaaaaagaagttataatttacaaataaaagaa--atagaataacaatttttagaaccaactccatcaacgtt |
315 |
Q |
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| T |
34549867 |
ttatcatagtagattatttcacacaaagcaaaaagaagttataatttacaaataaaagaaatatagaataacaatttttagaaccaactccatcaacgtt |
34549966 |
T |
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| Q |
316 |
taatatt |
322 |
Q |
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||||||| |
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| T |
34549967 |
taatatt |
34549973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 34404359 - 34404234
Alignment:
| Q |
188 |
atatatattactttctcattctcacaaaaattatcatagtagattatttcacacaaagcaaaaagaagttataatttacaaataaaagaaatagaataac |
287 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| |
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| T |
34404359 |
atatatattactttctcattctcacaaaa-ttatcaaagtagattattttacacagta-aaaaagaagttataatttacaaataatagaaattgaataac |
34404262 |
T |
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| Q |
288 |
aat---ttttagaaccaactccatcaac |
312 |
Q |
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||| ||||||||| |||||||||||| |
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| T |
34404261 |
aatttcttttagaactaactccatcaac |
34404234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 34404501 - 34404397
Alignment:
| Q |
34 |
ttacacaaatagctggaatgggttactgttttggcttttttgaatgccatagttgaaatggatcacttggtcttatcgttactcatgtttcccatgacaa |
133 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| |||| ||||| || |||||| ||||||||||||||||||| || |||| ||||||| |
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| T |
34404501 |
ttacacaaatagctggaaagggttttctttttggctttttt-aatgacatagctggaatgga---cttggtcttatcgttactcttgattccgatgacaa |
34404406 |
T |
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| Q |
134 |
ttttttctt |
142 |
Q |
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||||||||| |
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| T |
34404405 |
ttttttctt |
34404397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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