View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7302_low_9 (Length: 281)

Name: NF7302_low_9
Description: NF7302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7302_low_9
NF7302_low_9
[»] chr7 (28 HSPs)
chr7 (17-281)||(44540952-44541217)
chr7 (53-204)||(42607081-42607233)
chr7 (60-205)||(6729405-6729551)
chr7 (53-194)||(6730064-6730205)
chr7 (52-169)||(40257579-40257696)
chr7 (59-156)||(40257747-40257844)
chr7 (53-168)||(42607746-42607860)
chr7 (67-184)||(7677726-7677843)
chr7 (53-95)||(40320416-40320458)
chr7 (59-99)||(24996685-24996725)
chr7 (53-108)||(29060732-29060787)
chr7 (219-274)||(36906124-36906179)
chr7 (53-99)||(24995852-24995898)
chr7 (53-99)||(36844612-36844658)
chr7 (53-183)||(36845121-36845250)
chr7 (50-99)||(35771261-35771310)
chr7 (53-173)||(32871068-32871188)
chr7 (52-99)||(40319605-40319652)
chr7 (66-144)||(27599224-27599302)
chr7 (67-124)||(668193-668250)
chr7 (67-124)||(17145636-17145693)
chr7 (66-99)||(27600097-27600130)
chr7 (67-124)||(37468982-37469039)
chr7 (67-124)||(38779540-38779597)
chr7 (67-99)||(37468924-37468956)
chr7 (67-99)||(38778868-38778900)
chr7 (53-101)||(40740660-40740708)
chr7 (67-99)||(41194527-41194559)
[»] chr8 (13 HSPs)
chr8 (53-205)||(35943734-35943887)
chr8 (53-194)||(35943076-35943218)
chr8 (52-99)||(37562294-37562341)
chr8 (60-99)||(42345401-42345440)
chr8 (53-99)||(42346107-42346153)
chr8 (67-184)||(5035193-5035310)
chr8 (52-109)||(35840522-35840579)
chr8 (60-95)||(7054097-7054132)
chr8 (53-124)||(27321599-27321670)
chr8 (67-169)||(34992195-34992298)
chr8 (52-163)||(35839721-35839832)
chr8 (67-124)||(37639725-37639782)
chr8 (67-99)||(41859324-41859356)
[»] chr1 (29 HSPs)
chr1 (53-194)||(45923037-45923179)
chr1 (59-194)||(45922238-45922375)
chr1 (53-185)||(6075974-6076106)
chr1 (53-109)||(2687719-2687775)
chr1 (51-99)||(30780986-30781034)
chr1 (55-119)||(2684853-2684917)
chr1 (55-99)||(30466184-30466228)
chr1 (67-158)||(49611502-49611594)
chr1 (53-132)||(47334199-47334278)
chr1 (60-157)||(11032163-11032260)
chr1 (52-125)||(49420083-49420156)
chr1 (60-99)||(29334221-29334260)
chr1 (60-99)||(43316364-43316403)
chr1 (53-108)||(48835090-48835145)
chr1 (53-108)||(50950888-50950943)
chr1 (69-155)||(9948833-9948919)
chr1 (53-95)||(34716424-34716466)
chr1 (53-99)||(38931314-38931360)
chr1 (67-124)||(16270221-16270278)
chr1 (67-124)||(23440842-23440899)
chr1 (67-132)||(48972414-48972479)
chr1 (67-119)||(1012561-1012613)
chr1 (59-99)||(4640534-4640574)
chr1 (59-99)||(4641764-4641804)
chr1 (53-144)||(28371660-28371751)
chr1 (52-100)||(46134618-46134666)
chr1 (53-181)||(49420876-49421003)
chr1 (70-169)||(50827022-50827121)
chr1 (67-99)||(51974451-51974483)
[»] chr6 (24 HSPs)
chr6 (53-157)||(25067794-25067898)
chr6 (59-154)||(25067141-25067236)
chr6 (53-99)||(29290123-29290169)
chr6 (67-124)||(3542828-3542885)
chr6 (59-96)||(16764931-16764968)
chr6 (53-122)||(25371169-25371238)
chr6 (52-101)||(25371991-25372040)
chr6 (53-101)||(8384018-8384066)
chr6 (53-124)||(34717242-34717313)
chr6 (78-158)||(930948-931030)
chr6 (53-87)||(28975340-28975374)
chr6 (67-124)||(3543040-3543097)
chr6 (67-144)||(7193352-7193429)
chr6 (67-124)||(22582456-22582513)
chr6 (67-124)||(22587287-22587344)
chr6 (67-124)||(33018393-33018450)
chr6 (67-124)||(33479710-33479767)
chr6 (67-124)||(33480605-33480662)
chr6 (53-93)||(9453857-9453897)
chr6 (83-158)||(10608262-10608338)
chr6 (53-109)||(16766007-16766063)
chr6 (67-99)||(24125986-24126018)
chr6 (59-99)||(34034174-34034214)
chr6 (59-99)||(34035046-34035086)
[»] chr3 (20 HSPs)
chr3 (53-169)||(49161740-49161856)
chr3 (53-122)||(33968181-33968250)
chr3 (53-122)||(45297549-45297618)
chr3 (60-99)||(43768033-43768072)
chr3 (53-99)||(43768761-43768807)
chr3 (67-124)||(36750414-36750471)
chr3 (67-124)||(41755513-41755570)
chr3 (52-123)||(21166134-21166205)
chr3 (60-100)||(44022088-44022128)
chr3 (53-108)||(33454866-33454921)
chr3 (53-108)||(33455774-33455829)
chr3 (53-108)||(44021286-44021340)
chr3 (53-99)||(31598796-31598842)
chr3 (67-184)||(36750059-36750177)
chr3 (57-99)||(45501296-45501338)
chr3 (53-95)||(49160987-49161029)
chr3 (53-99)||(51421677-51421723)
chr3 (67-144)||(19132769-19132846)
chr3 (53-144)||(11442112-11442203)
chr3 (53-89)||(53030910-53030946)
[»] chr5 (26 HSPs)
chr5 (53-183)||(42650757-42650886)
chr5 (58-124)||(4789525-4789591)
chr5 (67-184)||(33001946-33002063)
chr5 (53-132)||(6803948-6804027)
chr5 (53-132)||(35263278-35263357)
chr5 (60-99)||(1970516-1970555)
chr5 (53-95)||(9923388-9923430)
chr5 (60-108)||(4607129-4607177)
chr5 (52-123)||(5620847-5620918)
chr5 (53-109)||(17766563-17766619)
chr5 (59-99)||(26712390-26712430)
chr5 (59-99)||(26982128-26982168)
chr5 (59-119)||(35262458-35262518)
chr5 (53-124)||(6804891-6804962)
chr5 (52-87)||(12202160-12202195)
chr5 (60-99)||(32943524-32943563)
chr5 (59-184)||(42654843-42654967)
chr5 (53-146)||(4820454-4820548)
chr5 (53-99)||(6912116-6912162)
chr5 (53-99)||(12201377-12201423)
chr5 (67-124)||(8204134-8204191)
chr5 (67-124)||(15183994-15184051)
chr5 (67-124)||(33002793-33002850)
chr5 (54-94)||(21770479-21770519)
chr5 (53-109)||(36912246-36912301)
chr5 (67-99)||(39950418-39950450)
[»] chr2 (21 HSPs)
chr2 (53-183)||(6084871-6085000)
chr2 (57-183)||(23875244-23875369)
chr2 (54-121)||(15602800-15602867)
chr2 (53-119)||(34617653-34617719)
chr2 (53-99)||(6085703-6085749)
chr2 (53-99)||(20992021-20992067)
chr2 (53-99)||(23876065-23876111)
chr2 (53-99)||(36390957-36391003)
chr2 (51-95)||(10670948-10670992)
chr2 (55-99)||(36391674-36391718)
chr2 (58-130)||(41767880-41767952)
chr2 (60-99)||(7868143-7868182)
chr2 (52-99)||(8145385-8145432)
chr2 (60-99)||(20991294-20991333)
chr2 (53-99)||(2307075-2307121)
chr2 (67-169)||(4479634-4479736)
chr2 (67-124)||(14573275-14573332)
chr2 (67-124)||(21471031-21471088)
chr2 (52-109)||(41519917-41519974)
chr2 (60-93)||(44094825-44094858)
chr2 (67-99)||(21471956-21471988)
[»] scaffold0041 (1 HSPs)
scaffold0041 (67-184)||(27235-27352)
[»] chr4 (37 HSPs)
chr4 (53-119)||(38010830-38010896)
chr4 (66-146)||(34371475-34371555)
chr4 (53-144)||(23383310-23383401)
chr4 (53-132)||(25970106-25970184)
chr4 (53-99)||(39429939-39429985)
chr4 (53-99)||(41261122-41261168)
chr4 (60-99)||(55514356-55514395)
chr4 (53-158)||(11680276-11680382)
chr4 (53-158)||(11688555-11688661)
chr4 (53-99)||(33370877-33370923)
chr4 (78-158)||(25655581-25655662)
chr4 (66-99)||(30808634-30808667)
chr4 (62-99)||(47326791-47326828)
chr4 (62-99)||(47341587-47341624)
chr4 (60-124)||(36450735-36450799)
chr4 (60-99)||(23425209-23425248)
chr4 (60-99)||(39429232-39429271)
chr4 (60-99)||(39652061-39652100)
chr4 (53-99)||(232051-232097)
chr4 (60-158)||(32449324-32449422)
chr4 (53-99)||(34154794-34154840)
chr4 (58-124)||(36451404-36451470)
chr4 (53-99)||(41261892-41261938)
chr4 (67-124)||(11417701-11417758)
chr4 (67-124)||(11417914-11417971)
chr4 (53-94)||(20351318-20351359)
chr4 (67-124)||(26610359-26610416)
chr4 (67-124)||(26611260-26611317)
chr4 (67-184)||(39523188-39523305)
chr4 (78-158)||(46764277-46764358)
chr4 (67-158)||(12590145-12590237)
chr4 (52-123)||(19860329-19860400)
chr4 (67-99)||(29651334-29651366)
chr4 (59-99)||(36013954-36013994)
chr4 (67-99)||(36865719-36865751)
chr4 (59-95)||(39870271-39870307)
chr4 (67-99)||(47377600-47377632)
[»] scaffold0311 (1 HSPs)
scaffold0311 (67-124)||(137-194)
[»] scaffold0155 (1 HSPs)
scaffold0155 (83-157)||(17369-17444)
[»] scaffold0150 (1 HSPs)
scaffold0150 (60-95)||(14019-14054)
[»] scaffold2003 (1 HSPs)
scaffold2003 (63-95)||(537-569)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 44540952 - 44541217
Alignment:
Q  17 atggttcacttcaagggactattacataattgcatcggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcatta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  44540952 atggttcacttcaagggactattacataattgcatcggtgaggtttagcatgggaaaggagagttgtttcccaccatgaaaaaattgtttttattcatta 44541051  T
Q  117 gatcaaataagaaacacaatcttatcatggtctatcaacacttaattatttttcactttatcttccactacaattctcactccaccattctattcttcta 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44541052 gatcaaataagaaacacaatcttatcatggcctatcaacacttaattatttttcactttatcttccactacaattctcactccaccattctattcttcca 44541151  T
Q  217 cgacaacacaccctccacaacccatctccct-tttgccctcaccacctcgttgcaccttctatata 281  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44541152 cgacaacacatcctccacaacccatctccctctttgccctcaccacctcgttgcaccttctatata 44541217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 42607081 - 42607233
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| |||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  42607081 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagttgtttttgtccattagatcaaatgagaaacacaatcttatcatgatctatc 42607180  T
Q  153 aacacttaatta-tttttcactttatcttccactacaattctcactccaccat 204  Q
    ||||||| |||| ||||||||||||||||||||||| |||||| |||||||||    
T  42607181 aacacttgattattttttcactttatcttccactaccattctctctccaccat 42607233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 6729405 - 6729551
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacactt 159  Q
    ||||||||||||||||||| |||||| |||| |||||||| || || |||| | || |||||||| |||||||||||||||||||||| |||||||||||    
T  6729405 tttagcatgggaaaggagaattgttttccactatgggaaagtttttcttgtcccttggatcaaatgagaaacacaatcttatcatggtttatcaacactt 6729504  T
Q  160 aatta-tttttcactttatcttccactacaattctcactccaccatt 205  Q
    ||||| ||||| |||||||||| || |||||||||| ||||||||||    
T  6729505 aattatttttttactttatctttcagtacaattctctctccaccatt 6729551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 6730205 - 6730064
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| || || ||||||| |||| |||||||| ||||||||||||||||||||||||||     
T  6730205 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaattt-tttttgtccattggatcaaatgagaaacacaatcttatcatggtctata 6730107  T
Q  153 aacacttaatta-tttttcactttatcttccactacaattctc 194  Q
    |||| || |||| ||||||||||| |||| |||| ||| ||||    
T  6730106 aacatttgattattttttcactttgtctttcactccaactctc 6730064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 40257579 - 40257696
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 151  Q
    ||||| ||||||| |||||||| ||||||||||| | ||||||| ||| || ||||||| ||||||||||||| ||||||||| |||||||||| |||||    
T  40257579 cggtggggtttagtatgggaaatgagagttgttttcgaccatggaaaagttatttttgtccattagatcaaatgagaaacacattcttatcatgatctat 40257678  T
Q  152 caacacttaattattttt 169  Q
    |||||||| |||||||||    
T  40257679 caacacttgattattttt 40257696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 40257844 - 40257747
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaaca 156  Q
    ||||||||||||||| | |||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||    
T  40257844 gtttagcatgggaaatgggagttgtttcccaccatgagaaagttgtttttgtccattagatcaaatgagaaacacattcttatcatgatctatcaaca 40257747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 42607860 - 42607746
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| |||||||||||| ||||| || |||||||||| ||| ||||| || ||||||| |||| |||||||| |||||||||||||||||||  ||||||    
T  42607860 ggtggggtttagcatggaaaaggggaattgtttcccatcataggaaagttatttttgtccatt-gatcaaatgagaaacacaatcttatcataatctatc 42607762  T
Q  153 aacacttaattatttt 168  Q
    ||||||| ||||||||    
T  42607761 aacacttgattatttt 42607746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 7677843 - 7677726
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 166  Q
    ||||||||||||||| ||||||||||||||||| ||| |  |||||||||||| |||| || |||||| |||||||||  ||| |||||||| |||||||    
T  7677843 tgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaacactaaattatt 7677744  T
Q  167 tttcactttatcttccac 184  Q
    ||| ||  ||||||||||    
T  7677743 ttttacaatatcttccac 7677726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 40320458 - 40320416
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatgg 40320416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 24996725 - 24996685
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  24996725 gtttagcatgggaaaggggagttgtttcccaccatgggaaa 24996685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 29060787 - 29060732
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    |||| |||||||||||||||||| || |||||||||||||||||||| || |||||    
T  29060787 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagtttttttt 29060732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 36906179 - 36906124
Alignment:
Q  219 acaacacaccctccacaacccatctcccttttgccctcaccacctcgttgcacctt 274  Q
    ||||||||||||||||||||||||||||| ||  || ||||||||| |||||||||    
T  36906179 acaacacaccctccacaacccatctccctctttaccccaccacctcattgcacctt 36906124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 24995852 - 24995898
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||||    
T  24995852 ggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaa 24995898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 36844612 - 36844658
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||    
T  36844612 ggtggggtttagcatgggaaaggtgagttgtttcccaccatgagaaa 36844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 36845250 - 36845121
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    ||||||||||||||||||||||| || ||||||| || ||||| ||| || ||| ||  |||||||| |  |||| |||| ||| ||||||| |||  ||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaagttttttatgaccattagattatgtaaggaacataatattatcatagtccctc 36845151  T
Q  153 aacacttaattatttttcactttatcttcca 183  Q
    ||||||  ||||||||| || ||||||||||    
T  36845150 aacactagattattttt-acattatcttcca 36845121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 35771310 - 35771261
Alignment:
Q  50 atcggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||| ||||||| ||||||||| | ||||||||||||||||||||||    
T  35771310 atcggtggggtttagtatgggaaagcaaagttgtttcccaccatgggaaa 35771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 32871188 - 32871068
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| ||||||||||||||| || ||||||||||||||||| ||||| || |||| |  |||| |||||  |||  |||| ||| ||||||| |||| ||    
T  32871188 ggtggggtttagcatgggaatggggagttgtttcccaccataggaaagtttttttggaccatttgatcatgtaaagaacataatattatcatagtctctc 32871089  T
Q  153 aacacttaattatttttcact 173  Q
    || |||  |||||||| ||||    
T  32871088 aatactatattattttacact 32871068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 40319605 - 40319652
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| ||||||| ||||||| |||||||| |||||||||||||||||    
T  40319605 cggtggggtttagtatgggaatggagagttatttcccaccatgggaaa 40319652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 27599224 - 27599302
Alignment:
Q  66 atgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 144  Q
    |||||||||| ||||||||||||||||||||||| ||   ||||  |||||||| || |||  |||||| |||||||||    
T  27599224 atgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcat 27599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 668193 - 668250
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  668193 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 668250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 17145636 - 17145693
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  17145636 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 17145693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 27600130 - 27600097
Alignment:
Q  66 atgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||| |||||||||||||||||||||||    
T  27600130 atgggaaaggggagttgtttcccaccatgggaaa 27600097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 37469039 - 37468982
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  37469039 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 37468982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 38779597 - 38779540
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  38779597 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 38779540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 37468924 - 37468956
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  37468924 tgggaaaggagagttctttcccaccatgggaaa 37468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 38778868 - 38778900
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  38778868 tgggaaaggagagttctttcccaccatgggaaa 38778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 40740660 - 40740708
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaat 101  Q
    ||||| |||||||||||||||||| | ||||||||||  ||||||||||    
T  40740660 ggtgatgtttagcatgggaaaggaaaattgtttcccatgatgggaaaat 40740708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 41194527 - 41194559
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  41194527 tgggaaaggagagttctttcccaccatgggaaa 41194559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 35943887 - 35943734
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| ||||||||||||||||||||| ||||||||||| |||| ||| || || |||| | || |||||||| |||||||||||||||||||||| ||||    
T  35943887 ggtggggtttagcatgggaaaggagaattgtttcccactatggaaaagtttttcttgtcccttggatcaaatgagaaacacaatcttatcatggtttatc 35943788  T
Q  153 aacacttaattat-ttttcactttatcttccactacaattctcactccaccatt 205  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||    
T  35943787 aacacttaattatttttttactttatctttcactacaattctctctccaccatt 35943734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 35943076 - 35943218
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| || || ||||||| ||||  ||||||| |||||||||||||||||||||||||||    
T  35943076 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaagttttttttgtccattgaatcaaatgagaaacacaatcttatcatggtctatc 35943175  T
Q  153 aacacttaatta-tttttcactttatcttccactacaattctc 194  Q
    ||||||| |||| ||||||||||| |||| |||| ||| ||||    
T  35943176 aacacttgattattttttcactttgtctttcactccaactctc 35943218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 37562294 - 37562341
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  37562294 cggtggggtttagcatgggaaaggagaattgtttcccaccataggaaa 37562341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 42345401 - 42345440
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  42345401 tttagcatgggaatggagagttgtttcccaccatgggaaa 42345440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 42346153 - 42346107
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||||    
T  42346153 ggtggggtttagcatgggaatggagagttgtttcccatcatgggaaa 42346107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 5035310 - 5035193
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 166  Q
    ||||||||||||||| ||| ||||||| ||||| ||| |  ||| |||||||| |||| || || ||| |||||||||  ||| |||||||| ||||||     
T  5035310 tgggaaaggagagttcttttccaccataggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaacactaaattatg 5035211  T
Q  167 tttcactttatcttccac 184  Q
    ||| ||  ||||||||||    
T  5035210 ttttacactatcttccac 5035193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 35840579 - 35840522
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 109  Q
    ||||| ||||||||||||||||||  ||||||||||||| |||||||| || ||||||    
T  35840579 cggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagttttttttg 35840522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 7054097 - 7054132
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7054097 tttagcatgggaatggagagttgtttcccaccatgg 7054132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 27321599 - 27321670
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    |||| ||||||||||||||||  |||||||||||||||||||  ||| || || ||| ||||||||| ||||    
T  27321599 ggtggggtttagcatgggaaataagagttgtttcccaccatgaaaaagttattattgatcattagattaaat 27321670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 34992298 - 34992195
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa-cacttaattat 165  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| |||| || |||| | || ||||||  ||| |||| |||| ||||||    
T  34992298 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactaaattat 34992199  T
Q  166 tttt 169  Q
    ||||    
T  34992198 tttt 34992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 35839721 - 35839832
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 151  Q
    ||||| ||||||||||||||||||  ||||||||||||  ||| |||| || ||||||   || |||| || |||| | |||| |||||||||| ||| |    
T  35839721 cggtggggtttagcatgggaaagggaagttgtttcccatgatgagaaagttttttttgactatcagattaagtaaggagcacactcttatcatgttctct 35839820  T
Q  152 caacacttaatt 163  Q
    ||||||| ||||    
T  35839821 caacactgaatt 35839832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 37639725 - 37639782
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  | |||||||||| ||||    
T  37639725 tgggaaaggagagttctttcccaccatgggaaagttgatcatattcattagattaaat 37639782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 41859324 - 41859356
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  41859324 tgggaaaggagagttctttcccaccatgggaaa 41859356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 45923179 - 45923037
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    ||||||||||||||||||| |||  | |||||| ||||||||| ||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  45923179 ggtgaggtttagcatgggatagggaaattgttttccaccatggaaaagttttttttgtccattagatcaaacaagaaacacaatcttatcatggtctatc 45923080  T
Q  153 aacacttaatta-tttttcactttatcttccactacaattctc 194  Q
    ||||||| |||| |||||  ||||||||||||||||| |||||    
T  45923079 aacacttgattatttttttgctttatcttccactacatttctc 45923037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 45922238 - 45922375
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttc-attagatcaaataagaaacacaatcttatcatggtctatcaacac 157  Q
    ||||| |||||||||||   ||||||||||||||||||||| || |||||  || ||||||||||| |||||||||||||||||||||||||||||||||    
T  45922238 gtttaacatgggaaagggaggttgtttcccaccatgggaaagtttttttttgtctattagatcaaacaagaaacacaatcttatcatggtctatcaacac 45922337  T
Q  158 ttaatta-tttttcactttatcttccactacaattctc 194  Q
    || |||| ||||||| ||| ||||||||||||||||||    
T  45922338 ttgattattttttcaatttgtcttccactacaattctc 45922375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 6075974 - 6076106
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||||||||||| |||||||||||||||| ||| | |||||| |||| ||| |  ||| |||||||| |||| || || ||| | ||||||| |||| ||    
T  6075974 ggtgaggtttagtatgggaaaggagagttcttttctaccatgagaaagttgatcatgtccattagattaaatgaggaatacatttttatcatagtctctc 6076073  T
Q  153 aacacttaattatttttcactttatcttccact 185  Q
    |||||| |||||||||| ||  |||||||||||    
T  6076074 aacactaaattattttttacactatcttccact 6076106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 2687775 - 2687719
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 109  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  2687775 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaaattatttttg 2687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 30781034 - 30780986
Alignment:
Q  51 tcggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30781034 tcggtgaggtttaacatgggaaaggagagttgtttcccatcatgggaaa 30780986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 2684853 - 2684917
Alignment:
Q  55 tgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 119  Q
    |||||||||||||||||||||| | |||||| ||| |||| |||| |||||||||| ||||||||    
T  2684853 tgaggtttagcatgggaaaggatatttgttttccatcatgagaaagttgtttttgtccattagat 2684917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 30466184 - 30466228
Alignment:
Q  55 tgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  30466184 tgaggtttagcatgggaatggggagttgtttcccaccatgggaaa 30466228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 49611594 - 49611502
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    |||||||||  |||| ||||||| |||||||||||| |||||||  |||||||| ||||| | |||||||| ||| |||||||| ||||||||    
T  49611594 tgggaaaggctagttttttcccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacact 49611502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 47334199 - 47334278
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 132  Q
    |||| |||||||| ||| ||||| |||||||||||||| |||||||| ||| || ||| |||||||| |||| |||||||    
T  47334199 ggtggggtttagcctggaaaaggggagttgtttcccacaatgggaaagttgattatgtccattagattaaatgagaaaca 47334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 11032260 - 11032163
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacac 157  Q
    |||| ||||||||||| || | |||||||||||||||||| |||  ||||  |||||||| || |||  |||||| ||||||||||| || |||||||    
T  11032260 tttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaagtaatgaacacattcttatcatggactctcaacac 11032163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 49420083 - 49420156
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaata 125  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||||||||  | ||||||  |||||||| |||||    
T  49420083 cggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagattaaata 49420156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 29334221 - 29334260
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  29334221 tttagcatgggaatggatagttgtttcccaccatgggaaa 29334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 43316364 - 43316403
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  43316364 tttagcatgggaatggatagttgtttcccaccatgggaaa 43316403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 48835145 - 48835090
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||| || |||||    
T  48835145 ggtggggtttagcatgggaaaggggaattgttttccaccatgggaaagtttttttt 48835090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 50950943 - 50950888
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    |||| ||||||||||||||| ||  |||||||||||||||| |||||||| |||||    
T  50950943 ggtggggtttagcatgggaatgggaagttgtttcccaccataggaaaattattttt 50950888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 9948919 - 9948833
Alignment:
Q  69 ggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaac 155  Q
    ||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| |||| || |||| | || ||||||  |||||||||    
T  9948919 ggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctatcaac 9948833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 34716424 - 34716466
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||| ||||||||||||||| |||||||||||||||| |||||    
T  34716424 ggtggggtttagcatgggaatggagagttgtttcccatcatgg 34716466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 38931314 - 38931360
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||| |||||| || ||||||||||||||||||||    
T  38931314 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaa 38931360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 16270221 - 16270278
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  16270221 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 16270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 23440899 - 23440842
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  23440899 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 23440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 48972479 - 48972414
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 132  Q
    ||||||||||||||| ||||||||||||| ||| ||| |  ||| |||||||| |||| |||||||    
T  48972479 tgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgagaaaca 48972414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 1012561 - 1012613
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 119  Q
    |||||||||||| || ||||||||||||||||| || |||| | |||||||||    
T  1012561 tgggaaaggagatttttttcccaccatgggaaagtttttttggatcattagat 1012613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 4640534 - 4640574
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  4640534 gtttagcatggtaaaggggaattgtttcccaccatgggaaa 4640574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 4641804 - 4641764
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||||| || ||||||||||||| ||||||    
T  4641804 gtttagcatgggaaaggggaattgtttcccaccaagggaaa 4641764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 28371751 - 28371660
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcat 144  Q
    ||||||||||||||||||||||   | || ||||||||||||||||| || |||||||  ||||||||||||  | |||||||  ||||||||    
T  28371751 ggtgaggtttagcatgggaaagct-acttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcat 28371660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 46134666 - 46134618
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaa 100  Q
    ||||| ||||||| ||||||||||  |||||||||||| ||||||||||    
T  46134666 cggtgtggtttagtatgggaaagggaagttgtttcccatcatgggaaaa 46134618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 49421003 - 49420876
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||||||||||| ||||||||||  ||||||||||||  |||| ||| ||| ||||   |||| ||| ||||||| | |||  |||||||||| ||| ||    
T  49421003 ggtgaggtttagtatgggaaagggaagttgtttcccatgatggaaaagttgattttagccatttgattaaataaggagcaccctcttatcatgttctctc 49420904  T
Q  153 aacacttaattatttttcactttatcttc 181  Q
     ||||| |||| ||||||||  |||||||    
T  49420903 cacactgaatt-tttttcacactatcttc 49420876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 50827121 - 50827022
Alignment:
Q  70 gaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa-cacttaattatttt 168  Q
    |||||||||||| ||||||||||||||||| ||| |  ||| |||||||| |||| ||||||| | | |||||||  ||| |||| |||| |||||||||    
T  50827121 gaaaggagagtt-tttcccaccatgggaaagttgatcatgtccattagattaaatgagaaacatatttttatcatactctctcaaccactaaattatttt 50827023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 51974451 - 51974483
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  51974451 tgggaaaggagagttctttcccaccatgggaaa 51974483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 25067898 - 25067794
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    |||| ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||||||| || |||| ||    
T  25067898 ggtggggtttagcatgggaaaggatatttgtttcccaccataggaaagttgtttttgtccattggatcaaataagaaatacaatcttattatagtctctc 25067799  T
Q  153 aacac 157  Q
    |||||    
T  25067798 aacac 25067794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 25067141 - 25067236
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa 154  Q
    ||||||||||||||| || | |||||| |||| |||||| | |||||||||| ||||||||||||| | |||||||| ||||| ||||||| ||||    
T  25067141 gtttagcatgggaaatgatacttgttttccactatgggagagttgtttttgtccattagatcaaatgaaaaacacaagcttattatggtctctcaa 25067236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 29290123 - 29290169
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||    
T  29290123 ggtggggtttagcatggaaatggagagttgtttcccaccatgggaaa 29290169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 3542828 - 3542885
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  |||||||||||| ||||    
T  3542828 tgggaaaggagagttttttcccaccatgggaaagttgatcatgttcattagattaaat 3542885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 16764931 - 16764968
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatggg 96  Q
    |||||||||||||||||| |||||||||||||||||||    
T  16764931 gtttagcatgggaaaggaaagttgtttcccaccatggg 16764968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 25371169 - 25371238
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaa 122  Q
    |||| |||||||||||||||||   | ||||||||||||||||||||||  ||||||  |||||||||||    
T  25371169 ggtggggtttagcatgggaaagtgaacttgtttcccaccatgggaaaatattttttgaccattagatcaa 25371238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 25372040 - 25371991
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaat 101  Q
    |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  25372040 cggtgaggtttagcatggaaaaggaaacttgtttcccacaatgggaaaat 25371991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 8384066 - 8384018
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaat 101  Q
    |||| |||||||||||||||||  ||||||||||||||||||| |||||    
T  8384066 ggtggggtttagcatgggaaagtggagttgtttcccaccatggaaaaat 8384018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 34717242 - 34717313
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaat 124  Q
    ||||||||||||||||||||||   | || ||||||||||||||||| || ||||||| ||||||||||||||    
T  34717242 ggtgaggtttagcatgggaaagct-acttttttcccaccatgggaaagttagtttttgatcattagatcaaat 34717313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 930948 - 931030
Alignment:
Q  78 agttgtttcccaccatgggaaaa--ttgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    |||| ||||||||||||||||||  | |||||||  |||||||| ||||| | |||||||| |||| ||||||| ||||||||    
T  930948 agttttttcccaccatgggaaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaacact 931030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 28975340 - 28975374
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcc 87  Q
    |||| ||||||||||||||||||||||||||||||    
T  28975340 ggtggggtttagcatgggaaaggagagttgtttcc 28975374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 3543097 - 3543040
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  3543097 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaat 3543040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 7193352 - 7193429
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 144  Q
    ||||||||||||||| ||||||||||||||||| ||| |  | | |||||||| |||| || |||| | |||||||||    
T  7193352 tgggaaaggagagttctttcccaccatgggaaagttgatcatctccattagattaaatgaggaacatattcttatcat 7193429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 22582513 - 22582456
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  22582513 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 22582456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 22587344 - 22587287
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  22587344 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 22587287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 33018450 - 33018393
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33018450 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 33018393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 33479710 - 33479767
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33479710 tgggaaaggagagttatttcccaccatgggaaagttgatcatgtccattagattaaat 33479767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 33480662 - 33480605
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33480662 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 33480605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 9453897 - 9453857
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccat 93  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
T  9453897 ggtgaggtttagcatgagaaaggaaagttgttttccaccat 9453857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 10608338 - 10608262
Alignment:
Q  83 tttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    ||||||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| ||| ||||    
T  10608338 tttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcact 10608262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 16766063 - 16766007
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 109  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||| || ||||||    
T  16766063 ggtggggtttagcatgggaaagaaaagttgttttccaccatggaaaagttttttttg 16766007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 24125986 - 24126018
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||| |||||||||||||||||||||||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaa 24126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 34034174 - 34034214
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  34034174 gtttaacatgggaaaggagaattgcttcccaccatgggaaa 34034214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 34035086 - 34035046
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| |||||||||||||| |||||||||| |||||||||    
T  34035086 gtttaacatgggaaaggagaattgtttcccatcatgggaaa 34035046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 49161856 - 49161740
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| || ||| ||  ||||||||||  |||| |||| ||| ||||||| |||| ||    
T  49161856 ggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagttttttatgagcattagatcatgtaaggaacataatattatcatagtctttc 49161757  T
Q  153 aacacttaattattttt 169  Q
    ||||||  |||||||||    
T  49161756 aacactagattattttt 49161740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 33968181 - 33968250
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaa 122  Q
    |||| ||||||||||||||||||  | ||||||||||||||||||||||  ||||||  |||||||||||    
T  33968181 ggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaaatattttttgaccattagatcaa 33968250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 45297549 - 45297618
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaa 122  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||| || |||||   |||||||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaagttttttttaaccattagatcaa 45297618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 43768033 - 43768072
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  43768033 tttagcatgggaatggagagttgtttcccaccatgggaaa 43768072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 43768807 - 43768761
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||||    
T  43768807 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaa 43768761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 36750471 - 36750414
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  |||||||||||| ||||    
T  36750471 tgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaat 36750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 41755513 - 41755570
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| |||||||||||| |||||||| |  |||||||||||| ||||    
T  41755513 tgggaaaggagagttttttcccaccatgagaaaattgatcatgttcattagattaaat 41755570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 21166205 - 21166134
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaa 123  Q
    |||||||||||||||||||||||   | || |||||||||||||||||||| |||||||  ||||||||||||    
T  21166205 cggtgaggtttagcatgggaaagtt-acttttttcccaccatgggaaaattagtttttgaccattagatcaaa 21166134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 44022128 - 44022088
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaaa 100  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  44022128 tttagcatggaaaaggagagttgttttccaccatgggaaaa 44022088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 33454866 - 33454921
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    |||| ||||||||||||||||||| | ||||||||||||||| |||| || |||||    
T  33454866 ggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagtttttttt 33454921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 33455829 - 33455774
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    |||| |||||||||||||||||| || |||||||||||||| ||||| || |||||    
T  33455829 ggtggggtttagcatgggaaaggggaattgtttcccaccataggaaagtttttttt 33455774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 44021286 - 44021340
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||| || |||||    
T  44021286 ggtggggtttagcatgggaaagaa-agttgtttcccaccatgggaaagtttttttt 44021340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 31598842 - 31598796
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| ||||||||||| |||| | ||||||||||||||||||||||    
T  31598842 ggtgaagtttagcatggaaaagaaaagttgtttcccaccatgggaaa 31598796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 36750059 - 36750177
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa-cacttaattat 165  Q
    ||||||||||||||| ||| ||||||||| ||| ||| |  |||||||||||| |||| || || ||| |||||||||  ||| |||| ||||  |||||    
T  36750059 tgggaaaggagagttcttttccaccatggaaaagttgatcatgttcattagattaaatgaggaatacattcttatcatactctctcaaccactagattat 36750158  T
Q  166 ttttcactttatcttccac 184  Q
    |||| ||  ||||||||||    
T  36750159 tttttacactatcttccac 36750177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 45501338 - 45501296
Alignment:
Q  57 aggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||| |||||||||| ||||||||| |||||||||||||    
T  45501338 aggtttagtatgggaaaggggagttgttttccaccatgggaaa 45501296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 49160987 - 49161029
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  49160987 ggtggggtttagcatgggaaaggggagttgtttcctaccatgg 49161029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 51421723 - 51421677
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||| |||||| || ||||||||||||||||||||    
T  51421723 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaa 51421677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 19132846 - 19132769
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 144  Q
    |||||||||| |||| ||||||||||||||||| ||| |  ||| |||||||| |||| || |||| | |||||||||    
T  19132846 tgggaaaggaaagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcttatcat 19132769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 11442203 - 11442112
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcat 144  Q
    ||||||||||||||||||||||   | || ||||||||||||||||| || |||||||  |||||||||||| ||  ||||||  ||||||||    
T  11442203 ggtgaggtttagcatgggaaagct-acttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcat 11442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 53030910 - 53030946
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttccca 89  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  53030910 ggtgaggtttagcatgagaaaggagaattgtttccca 53030946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 42650757 - 42650886
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    ||||||||||||||||||||||| || ||||||  |||||||||||| || ||| ||  ||||||||||  |||| |||| ||| ||||||| |||| ||    
T  42650757 ggtgaggtttagcatgggaaaggggaattgtttttcaccatgggaaagttttttatgagcattagatcatgtaaggaacataatattatcatagtctttc 42650856  T
Q  153 aacacttaattatttttcactttatcttcca 183  Q
    ||||||  ||||||||| || ||||||||||    
T  42650857 aacactagattattttt-acattatcttcca 42650886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 4789525 - 4789591
Alignment:
Q  58 ggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    |||||||||||||||||| ||||||||||||||||||||||| || || |||  |||||||||||||    
T  4789525 ggtttagcatgggaaaggggagttgtttcccaccatgggaaagttattcttgaccattagatcaaat 4789591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 33001946 - 33002063
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 166  Q
    ||||||||||||||| ||||||||||||| ||| ||| |  ||| |||||||| |||| || || ||| |||||||||  ||| |||||||| |||||||    
T  33001946 tgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaacactaaattatt 33002045  T
Q  167 tttcactttatcttccac 184  Q
    ||| ||  ||||||||||    
T  33002046 ttttacactatcttccac 33002063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 6803948 - 6804027
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 132  Q
    |||| ||||||| ||||||||||  |||||||||| ||||| ||||| || ||||||| |||| ||||||||||||||||    
T  6803948 ggtggggtttagtatgggaaagggaagttgtttcctaccataggaaatttctttttgtccattggatcaaataagaaaca 6804027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 35263357 - 35263278
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 132  Q
    |||||||||||||||||||||||| |||||||| ||| ||||| ||| |||||||| | |||||||| || |||| ||||    
T  35263357 ggtgaggtttagcatgggaaaggatagttgttttccatcatggaaaagttgtttttatccattagattaagtaaggaaca 35263278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 1970555 - 1970516
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1970555 tttagcatgggaatggagagttgtttcccaccatgggaaa 1970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 9923388 - 9923430
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  9923388 ggtggggtttagcatgggaatggagagttgtttcccaccatgg 9923430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 4607177 - 4607129
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 108  Q
    ||||||||||||| ||||||||||||||||||||| |||| || |||||    
T  4607177 tttagcatgggaatggagagttgtttcccaccatgagaaagtttttttt 4607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 5620918 - 5620847
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaa 123  Q
    |||||||||||||||||||||||   | || |||||||||||||||||||| |||||||  ||||||||||||    
T  5620918 cggtgaggtttagcatgggaaagtt-acttttttcccaccatgggaaaattagtttttgaccattagatcaaa 5620847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 17766563 - 17766619
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 109  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| |||| || ||||||    
T  17766563 ggtgagatttagtatgggaaaggatagttgtttcccaccatgagaaagttttttttg 17766619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 26712430 - 26712390
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  26712430 gtttagcatgggaaagggaagttgtttcccaccatgggaaa 26712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 26982168 - 26982128
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  26982168 gtttagcatgggaaagggaagttgtttcccaccatgggaaa 26982128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 35262458 - 35262518
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 119  Q
    |||||||||||||||||| | |||||||| ||||||||||| || ||||||  ||||||||    
T  35262458 gtttagcatgggaaaggataattgtttcctaccatgggaaagttatttttgaccattagat 35262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 6804891 - 6804962
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    |||| |||||||||||||||||  ||||||||||||||||||| ||| |  ||||||  ||| |||||||||    
T  6804891 ggtggggtttagcatgggaaagaggagttgtttcccaccatggaaaagtactttttgaccatcagatcaaat 6804962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 12202195 - 12202160
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcc 87  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12202195 cggtgaggtttagcatgggaaaggaaagttgtttcc 12202160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 32943524 - 32943563
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaa 32943563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 42654843 - 42654967
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacac 157  Q
    |||||||||||||||||  |||| ||  ||||||||||||| || ||||||   |||| ||| || || | |||| ||| ||| |||||||| |||||||    
T  42654843 gtttagcatgggaaaggctagttttt--ccaccatgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaacac 42654940  T
Q  158 ttaattatttttcactttatcttccac 184  Q
    ||| || |||||||| |||||||||||    
T  42654941 ttatttttttttcacattatcttccac 42654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 4820454 - 4820548
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa-attgtttttgttcattagatcaaataagaaacacaatcttatcatgg 146  Q
    |||| |||||| |||||||||||  | |||||| |||||||||||||  || ||||||| ||||||||  | ||||||||| ||| |||||||||    
T  4820454 ggtggggtttaacatgggaaagggaaattgttttccaccatgggaaattttttttttgtccattagattgagtaagaaacataattttatcatgg 4820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 6912116 - 6912162
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||| |||| |||||||| |||||||||||| |||||||||||||    
T  6912116 ggtgagatttaacatgggaatggagagttgttttccaccatgggaaa 6912162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 12201377 - 12201423
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||| |||||||||||||||||||||| |||||| ||||    
T  12201377 ggtggggtttagtatgggaaaggagagttgtttcctaccatgagaaa 12201423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 8204134 - 8204191
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  8204134 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 8204191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 15184051 - 15183994
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  15184051 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 15183994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 33002850 - 33002793
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33002850 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 33002793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 21770479 - 21770519
Alignment:
Q  54 gtgaggtttagcatgggaaaggagagttgtttcccaccatg 94  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  21770479 gtgaggtttagcatgggaaaagttagttgtttcccaccatg 21770519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 36912246 - 36912301
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 109  Q
    |||| ||||||||||||||||||  | || ||||||||||||||||| |||||||||    
T  36912246 ggtggggtttagcatgggaaaggctattt-tttcccaccatgggaaagttgtttttg 36912301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 39950418 - 39950450
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  39950418 tgggaaaggagagttctttcccaccatgggaaa 39950450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 6084871 - 6085000
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 152  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||||| || ||| ||  ||||| ||||  ||||||||| ||| ||||||| |||| ||    
T  6084871 ggtgaggtttaacatgggaaaggggaattgtttcccatcatgggaaagttttttatgaccattaaatcatgtaagaaacataatattatcatagtctttc 6084970  T
Q  153 aacacttaattatttttcactttatcttcca 183  Q
    ||||||  ||||||||| || ||||||||||    
T  6084971 aacactagattattttt-acattatcttcca 6085000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 23875244 - 23875369
Alignment:
Q  57 aggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaaca 156  Q
    ||||||||||||||||||| || ||||||| || ||||||||| || ||| ||  ||||||||||  |||| |||| ||| ||||||| |||| ||||||    
T  23875244 aggtttagcatgggaaaggggaattgtttcgcatcatgggaaagttttttatgaccattagatcatgtaaggaacataatattatcatagtctttcaaca 23875343  T
Q  157 cttaattatttttcactttatcttcca 183  Q
    ||  ||||||||| || ||||||||||    
T  23875344 ctagattattttt-acattatcttcca 23875369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 15602867 - 15602800
Alignment:
Q  54 gtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatca 121  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||  ||||||  ||||||||||    
T  15602867 gtgaggtttagcataggaaagggaagttgtttcccaccatgggaaaatattttttgaccattagatca 15602800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 34617653 - 34617719
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 119  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| || ||||||  ||||||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagat 34617719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 6085749 - 6085703
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  6085749 ggtggggtttagcatgggaaaggtgagttgtttcctaccatgggaaa 6085703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 20992067 - 20992021
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||||    
T  20992067 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaa 20992021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 23876111 - 23876065
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||    
T  23876111 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaa 23876065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 36390957 - 36391003
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||    
T  36390957 ggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaa 36391003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 10670992 - 10670948
Alignment:
Q  51 tcggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||    
T  10670992 tcggtgaggtttagcatgggaaaggaaagttgtttttcaccatgg 10670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 36391718 - 36391674
Alignment:
Q  55 tgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||    
T  36391718 tgaggtttagtatgggaaaggggagttgttttccaccatgggaaa 36391674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 41767880 - 41767952
Alignment:
Q  58 ggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaa 130  Q
    ||||||| |||||||| ||||  ||||||||||||| ||||| || ||||||| ||||  |||||||||||||    
T  41767880 ggtttagtatgggaaatgagaactgtttcccaccataggaaagttttttttgtccattgaatcaaataagaaa 41767952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 7868182 - 7868143
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  7868182 tttagcatgagaaaggggagttgtttcccaccatgggaaa 7868143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 8145385 - 8145432
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  8145385 cggtggggtttagaatgggaatgaagagttgtttcccaccatgggaaa 8145432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 20991294 - 20991333
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  20991294 tttagcatgggaatggagagttgttttccaccatgggaaa 20991333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 2307121 - 2307075
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||||||||||||||||  |||||||| |||||||| ||||    
T  2307121 ggtgaggtttagcatgggaaagggaagttgttttccaccatgagaaa 2307075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 4479736 - 4479634
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 166  Q
    ||||||||||||||| |||| |||||||||||| ||  |  ||| |||||||| |||| || |||| | |||||||||  ||| || ||||| |||||||    
T  4479736 tgggaaaggagagttctttctcaccatgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcatactctctccacactaaattatt 4479637  T
Q  167 ttt 169  Q
    |||    
T  4479636 ttt 4479634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 14573275 - 14573332
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  14573275 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaat 14573332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 21471031 - 21471088
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  21471031 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 21471088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 41519974 - 41519917
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 109  Q
    |||||| |||||| ||||||||||  |||| ||||||||||||||||| || ||||||    
T  41519974 cggtgaagtttagtatgggaaagggaagttttttcccaccatgggaaagttttttttg 41519917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 44094858 - 44094825
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccat 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  44094858 tttagcatgggaaaggaaagttgtttcccaccat 44094825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 21471988 - 21471956
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  21471988 tgggaaaggagagttctttcccaccatgggaaa 21471956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 27235 - 27352
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 166  Q
    ||||||||||||||| ||||||| ||||||||| ||| |  ||| |||||||| |||| || |||||| |||||||||  ||| |||||||| |||||||    
T  27235 tgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctcaacactaaattatt 27334  T
Q  167 tttcactttatcttccac 184  Q
    ||| ||  ||||||||||    
T  27335 ttttacactatcttccac 27352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 38010896 - 38010830
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 119  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||| |||||||||| ||||||||    
T  38010896 ggtgaggtttagcatgggaaaggatatttgttttccatcatgggaaagttgtttttgtccattagat 38010830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 34371475 - 34371555
Alignment:
Q  66 atgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatgg 146  Q
    |||||||||| || |||||||||||||||||||| || ||||||| ||||||||  | ||||||||| ||| |||||||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagttttttttgtccattagattgagtaagaaacataattttatcatgg 34371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 23383310 - 23383401
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 144  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||| ||  |||| | |||| |||||||| |  |||||| |||||||||    
T  23383310 ggtggggtttagaatgagaaaggagagttgtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcat 23383401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 25970106 - 25970184
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 132  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||  | ||| |||||||| |||| |||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagttg-atatgtccattagattaaatgagaaaca 25970184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 39429985 - 39429939
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgggaaa 39429939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 41261122 - 41261168
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  41261122 ggtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaa 41261168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 55514395 - 55514356
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  55514395 tttagcatgggaaaggaaagttgtttcccaccatgggaaa 55514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 11680276 - 11680382
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 151  Q
    |||||||||||   |||||||||  |||| ||||||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| |    
T  11680276 ggtgaggtttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctct 11680375  T
Q  152 caacact 158  Q
    || ||||    
T  11680376 cagcact 11680382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 11688555 - 11688661
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 151  Q
    |||||||||||   |||||||||  |||| ||||||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| |    
T  11688555 ggtgaggtttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctct 11688654  T
Q  152 caacact 158  Q
    || ||||    
T  11688655 cagcact 11688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 33370923 - 33370877
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||    
T  33370923 ggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaa 33370877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 25655662 - 25655581
Alignment:
Q  78 agttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    |||| ||||||||||||||||| || |||||||  |||||||| ||||| |||||||||| |||| ||||||| ||| ||||    
T  25655662 agttttttcccaccatgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtctctcagcact 25655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 30808634 - 30808667
Alignment:
Q  66 atgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||||||||||||||||||||||    
T  30808634 atgggaaaggagagttgtttcccaccatgggaaa 30808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 47326828 - 47326791
Alignment:
Q  62 tagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  47326828 tagcatgggaaaggaaagttgtttcccaccatgggaaa 47326791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 47341624 - 47341587
Alignment:
Q  62 tagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  47341624 tagcatgggaaaggaaagttgtttcccaccatgggaaa 47341587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 36450735 - 36450799
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||| || ||| |||| ||| ||||    
T  36450735 tttagcatgggaaaggggagttgttttccaccatgggaaagttgattatgtccattggattaaat 36450799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 23425248 - 23425209
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  23425248 tttagtatgggaatggagagttgtttcccaccatgggaaa 23425209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 39429232 - 39429271
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  39429232 tttagcatgggaatggagagttgtttcctaccatgggaaa 39429271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 39652100 - 39652061
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  39652100 tttagcatgggaatggagagttgtttctcaccatgggaaa 39652061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 232097 - 232051
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaa 232051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 32449324 - 32449422
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    ||||| ||||||||||| | |||||||||||||||| |||||  ||||||   ||||||| ||| | |||   |||| ||||||||||||||| |||||    
T  32449324 tttagtatgggaaaggatacttgtttcccaccatggaaaaatattttttgacaattagattaaagaggaataccaattttatcatggtctatccacact 32449422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 34154794 - 34154840
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| |||||||||||||||| || | ||||||||||||||||||||    
T  34154794 ggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaa 34154840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 36451470 - 36451404
Alignment:
Q  58 ggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    |||||||||||||||||  |||||||||| |||||||| ||| ||| || ||| |||||||| ||||    
T  36451470 ggtttagcatgggaaagaggagttgtttctcaccatggaaaagttgattatgtccattagattaaat 36451404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 41261938 - 41261892
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    |||| ||||||| |||||||| ||||||||||||| |||||||||||    
T  41261938 ggtggggtttagtatgggaaatgagagttgtttcctaccatgggaaa 41261892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 11417701 - 11417758
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  11417701 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 11417758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 11417971 - 11417914
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  11417971 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 11417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 20351359 - 20351318
Alignment:
Q  53 ggtgaggtttagcatgggaaaggagagttgtttcccaccatg 94  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  20351359 ggtggggtttagtatgggaatggagagttgtttcccaccatg 20351318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 26610359 - 26610416
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||| ||||||| ||||||||||||||||||||| |  ||| |||||||| ||||    
T  26610359 tgggaaatgagagttctttcccaccatgggaaaattgatcatgtccattagattaaat 26610416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 26611317 - 26611260
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  26611317 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaat 26611260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 39523305 - 39523188
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 166  Q
    ||||||||||||||| ||| ||||||||||||| ||| |  ||| |||||||| |||| || || |||   ||| |||  ||| |||||||| |||||||    
T  39523305 tgggaaaggagagttcttttccaccatgggaaagttgatcatgtccattagattaaatgaggaatacatctttaccatactctctcaacactaaattatt 39523206  T
Q  167 tttcactttatcttccac 184  Q
    ||| ||  ||||||||||    
T  39523205 ttttacactatcttccac 39523188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 46764277 - 46764358
Alignment:
Q  78 agttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    |||| ||||||||||||||||| || |||||||  ||||| || ||||| |||||||||| |||| ||||||| ||| ||||    
T  46764277 agttttttcccaccatgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtctctcagcact 46764358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 12590237 - 12590145
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 158  Q
    |||||||||  |||| ||| ||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| ||| ||||    
T  12590237 tgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcact 12590145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 19860329 - 19860400
Alignment:
Q  52 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaa 123  Q
    |||||||||||||||||||||||   | || ||||||||||||||||| || |||||||  ||||||||||||    
T  19860329 cggtgaggtttagcatgggaaagct-atttttttcccaccatgggaaagttagtttttgaccattagatcaaa 19860400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 29651366 - 29651334
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  29651366 tgggaaaggagagttctttcccaccatgggaaa 29651334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 36013994 - 36013954
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  36013994 gtttagcatgggaaatgaaagttgtttaccaccatgggaaa 36013954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 36865751 - 36865719
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  36865751 tgggaaaggagagttctttcccaccatgggaaa 36865719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 39870307 - 39870271
Alignment:
Q  59 gtttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||||||||||||||| | ||||||||||||||||||    
T  39870307 gtttagcatgggaaagaaaagttgtttcccaccatgg 39870271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 47377632 - 47377600
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaa 99  Q
    ||||||||| |||||||||||||||||||||||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaa 47377600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 194 - 137
Alignment:
Q  67 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 124  Q
    ||||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||    
T  194 tgggaaaggagagttctttcccaccatgggaaagttgattatgttcattagattaaat 137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 17369 - 17444
Alignment:
Q  83 tttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacac 157  Q
    ||||||||||||||||| || ||||||   |||| ||||||||| | |||||||| |||||||||||| |||||||    
T  17369 tttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcatggtctttcaacac 17444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 14019 - 14054
Alignment:
Q  60 tttagcatgggaaaggagagttgtttcccaccatgg 95  Q
    |||||||||||||||| |||||||||||||||||||    
T  14019 tttagcatgggaaaggggagttgtttcccaccatgg 14054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 569 - 537
Alignment:
Q  63 agcatgggaaaggagagttgtttcccaccatgg 95  Q
    ||||||||||||| |||||||||||||||||||    
T  569 agcatgggaaaggggagttgtttcccaccatgg 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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