View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7303_high_4 (Length: 362)
Name: NF7303_high_4
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 3562775 - 3563103
Alignment:
| Q |
18 |
gttgcagcaccatcaatattgcacttcaaccagttttgatatgggggctgccaaattatttctttgatgactggagcctttggagcatgaatgttgacat |
117 |
Q |
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| T |
3562775 |
gttgcagcaccatcagtattgcacttcaaccagttttgatatgggggctgccaaattatttctttgatgactggagcctatggagcatgaatgttgacat |
3562874 |
T |
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| Q |
118 |
tacacttctttagaatgatcaagtccctgactgaggatttggacgttttgagtgtattgttacctgttaaagagattgcagcaatgatattattgattcc |
217 |
Q |
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| T |
3562875 |
tacacttctttagaatgatcaagtccctgactgaggatttggacgttttgagtgtattgttacctgttaaagagattgcagcaatgatattattgattcc |
3562974 |
T |
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| Q |
218 |
tattctccagttgaaaggtttcccttgaaatctaaattggttccttgcaaaccaaatggtcctcatgatatttataattgcagctaaaaccaccactttg |
317 |
Q |
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| T |
3562975 |
tattctccagttgaaaggtttcccttgaaatctaaattggttccttgcaaaccaaatggtactcatgatatttataattgcagctagaaccaccactttg |
3563074 |
T |
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| Q |
318 |
cattgttgagaccaagatctatcacacag |
346 |
Q |
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| T |
3563075 |
cattgttgagaccaagatctatcacacag |
3563103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 9749376 - 9749414
Alignment:
| Q |
78 |
tctttgatgactggagcctttggagcatgaatgttgaca |
116 |
Q |
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| T |
9749376 |
tctttgatgattggtgcctttggagcatgaatgttgaca |
9749414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 14169626 - 14169674
Alignment:
| Q |
223 |
tccagttgaaaggtttcccttgaaatctaaattggttccttgcaaacca |
271 |
Q |
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| T |
14169626 |
tccagttgaaaggtttcccttggaatctgtattggtttcttgcaaacca |
14169674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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