View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7303_high_6 (Length: 303)
Name: NF7303_high_6
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 3415111 - 3415398
Alignment:
| Q |
1 |
gttacttcatctttgtatatttagcgcactagttataaagaaagaactataccttatttggtttcaaaaataattaagagaaaatgagattcttcgtaac |
100 |
Q |
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| T |
3415111 |
gttacttcaactttgtatatttagcacactagttataaagaaagaactatgccttatttggtttcaaaaataattaagagaaaatgagattcttcgtaac |
3415210 |
T |
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| Q |
101 |
ttcatttggatcataaacgtaaaatgcttagttattgaaaaccatagagttttgattttgataaaagtaataagtctaaaagtgtcaaagataatttatt |
200 |
Q |
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| T |
3415211 |
ttcatttggatcataaacgtaaaatgcttagttattgaaaaccatagagttttgattttgataaaagtaacaagtctaaaagtgtcaaagataatttatt |
3415310 |
T |
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| Q |
201 |
attacaaaacatgtttattgaaacccagttgtttttccccgcgagcgcttcaacaatgcaacacaccatcaattttaaagttcttctt |
288 |
Q |
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| T |
3415311 |
attacaaaacatgtttattgaaacccagttgtttttccccgcgagcgcttcaacaatgcaacacaccatcaattttaaagttcttctt |
3415398 |
T |
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Back To:
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Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 31095462 - 31095176
Alignment:
| Q |
1 |
gttacttcatctttgtatatttagcgcactagttataaagaaa-gaactataccttatttggtttcaa--aaataattaagagaaaatgagattcttcgt |
97 |
Q |
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||||| ||| ||| ||||||||||| ||||| ||||||| ||| |||||||||||| |||||||| | ||||||||||||| |||||||||||||||| |
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| T |
31095462 |
gttacctcaacttcgtatatttagcacactaattataaacaaaagaactatacctttattggtttccacaaaataattaagagcaaatgagattcttcgt |
31095363 |
T |
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| Q |
98 |
aacttcatttggatcataaacgtaaaatgcttagttattgaaaaccatagagttttgattttgataaaagtaataagtctaaaagtgtcaaagataattt |
197 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||| || || ||||| || ||||||||||||||||||||| |||| |
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| T |
31095362 |
aacttcttttggatcataaacgtaaaatgtttagttattgaaa-ccatag--ttttgacttcga-aaaagaaacaagtctaaaagtgtcaaagatgattt |
31095267 |
T |
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| Q |
198 |
attattacaaaacatgtttattgaaacccagttgtttttccccgcgagcgcttcaacaatgcaacacaccatcaattttaaagttcttctt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31095266 |
attattacaaaacatgtttattgaaacccagttgttttcccccgcgagcgcttcaacaatgcaacacaccatcaattttaaagttcttctt |
31095176 |
T |
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