View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7303_low_2 (Length: 585)
Name: NF7303_low_2
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 55086743 - 55087285
Alignment:
| Q |
18 |
atcaatctaggcatagacctttcattgattcaaagcaaaaaggaacacttgctttgatagttgatatcaatgatcataaattcataatactaaagtgtgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55086743 |
atcaatctaggcatagacctttcattgattcaaagcaaaaaggaacacttgctttgatagttgatatcaatgatcataaattcataatactaaagtgtgg |
55086842 |
T |
|
| Q |
118 |
ttttgggtttagatttgtatttggatatacctctggatagatgacaacagcgttgtggagttctttggaaagatatttatcggaggttagctttataatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55086843 |
ttttgggtttagatttgtatttggatatacctctggacagacgacaacagcgttgtggagttctttggaaagatatttatcggaggttagctttataatc |
55086942 |
T |
|
| Q |
218 |
aaacactgtttaacgttttacatttcatacacctgagagcttactgcttaggtgtgaagttttccaccttaaaattatacattgttgtgtatgcatagan |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55086943 |
aaacactgtttaacgttttacatttcatacacctgagagcttactgcttaggtgcgaagttttccaccttaaaattatacattgttgtgtatgcatagat |
55087042 |
T |
|
| Q |
318 |
nnnnnnnaaatgaaattttcttttccttcttcaggtgtgtcatttgtggctgcactaggctttttactatatggaggaaggtgaggcttctgcatcttgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55087043 |
tttttaaaaatgaaattttcttttccttcttcaggtgtgtcatttgtggctgcactaggctttttactatatggaggaaggtgaggcttctgcatcttgt |
55087142 |
T |
|
| Q |
418 |
ctcacttgcaatggtctatgaaatattgaaatattgaaatatctctgcagtgtctgtctcatatattctctactaattcatggttgaaatggaccgtctc |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55087143 |
ctcacttgcaatggtcta--------tgaaatattgaaatatctctgcagtgtctgtctcatatattctctactaattcatggttgacatggaccgtctc |
55087234 |
T |
|
| Q |
518 |
tcttattaacaccttgtacatattaaat-tttctagattattttgcatgct |
567 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
55087235 |
tcttattaacacctattacatattaaatgtttctagattattttgcatgct |
55087285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 7965087 - 7965154
Alignment:
| Q |
344 |
ttcttcaggtgtgtcatttgtggctgcactaggctttttactatatggaggaaggtgaggcttctgca |
411 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
7965087 |
ttcttcaggtgtatcatttgtagctgcaataggcttcctaatatttggaggaaggtgaggcttctgca |
7965154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 7964870 - 7964987
Alignment:
| Q |
103 |
aatactaaagtgtggttttgggtttagatttgtatttggatatacctctggatagatgacaacagcgttgtggagttctttggaaagatatttatcggag |
202 |
Q |
| |
|
||||||||| ||||| ||||| || || || || | ||||| ||||||||| ||||| |||| |||||||| ||| |||||||||||||||| | || |
|
|
| T |
7964870 |
aatactaaactgtggctttggattcaggttggtttctggatttacctctggttagattacaatgatgttgtggacttcattggaaagatatttatagcag |
7964969 |
T |
|
| Q |
203 |
gttagctttataatcaaa |
220 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
7964970 |
gttagctttttaagcaaa |
7964987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University