View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7303_low_3 (Length: 526)
Name: NF7303_low_3
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 55370287 - 55370785
Alignment:
| Q |
19 |
ttagttacagctagttgagttacttgcagtgcaagtaaccaactaactaatatgatcaggcttagnnnnnnnnnnnnngctaataacatggttaggctta |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
55370287 |
ttagttacagttagttgagttacttgcagtgcaagtaaccaactaactaatatggttaggcttagtttttctttttttgctaataacatggttaggctta |
55370386 |
T |
|
| Q |
119 |
gttggtcaaaatagtgactcctgagacgctgtataaacacatacctgttgaaagaatacgattttgaatttcgcattaaactatcattgatcgatgcgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| |
|
|
| T |
55370387 |
gttggtcaaaatagtgactcctgagacgttgtataaacacatacctgttgaaagaatacgattttgaatttcacattaaactagcattaatcgatacgtt |
55370486 |
T |
|
| Q |
219 |
tgtaataatgagtgcaaaattaaattgtgtgtgcaatttacttcaatgattccaaacatcttgtagtagattctctccataatttgtg-aaagcttcaca |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
55370487 |
tgtaat---gagtgcaaaattaaattgtgtgtgcaatttacttcaatgattccaaacatcttgtagtagattctctccataatttgtgcaaagcttaaca |
55370583 |
T |
|
| Q |
318 |
attcagaaagcaaaaaagagatcaatagtttacgattaaagaaaccatagtgagggaataataaaagcaaaaggaggtcctcaaaaaagcaacaacactt |
417 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55370584 |
attgagaaagaaaaaaagagatcaatagtttacgattaaagaaactatagtgagggaataataaaagcaaaaggaggtcctcaaaaaagcaacaacactt |
55370683 |
T |
|
| Q |
418 |
gcagatataattattattctctcatacttcaagctttaaaattcttagaccaattttgactcaaaaaccatcaacctagtatctgttcatgcattcatct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55370684 |
gcagatataattattattctctcatacttcaagctttaaaattcttagaccacttttgactcaaaaaccatcaacctagtatctgttcatgcattcatct |
55370783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University