View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7303_low_5 (Length: 375)
Name: NF7303_low_5
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 40227266 - 40227600
Alignment:
| Q |
21 |
aatattagaaagagtggaagacgtatgcaactatagaaaaaaccaataaataattttagtggttaggttttgagttctataatgttattttctgagattg |
120 |
Q |
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| T |
40227266 |
aatattagaaagagtggaagacgtatgcaactatagaaaaaaccaataaataattttagtggttaggttttgagttctataatgttattttctgagattg |
40227365 |
T |
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| Q |
121 |
atttattattattattaaattgggtttcttgcaatttaacctaattatttttgcaaaacctgtcacgaagcacgctaatacactaatgtacaatgatgga |
220 |
Q |
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| T |
40227366 |
atttat---tattattaaattgggtttcttgcaatttaacctaattatttttgcaaaacctgtcacgaagcacgctaatacactaatgtacaatgatgga |
40227462 |
T |
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| Q |
221 |
ttggttggttagatccaagacctggttatataattnnnnnnnntggtagagtcttattacttcacaaaacgcatgcgaaatgataagtgataattcttaa |
320 |
Q |
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| T |
40227463 |
ttggttggttagatccaagacctggttatataattaaaaaaaatggtacagtcttattacttcacaaaacgcatgcgaaatgataagtgataattcttaa |
40227562 |
T |
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| Q |
321 |
-tttttaattagggcaattctaattgtgctaagggcac |
357 |
Q |
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| T |
40227563 |
ttttttaattagggcaattctaattgtgctaagggcac |
40227600 |
T |
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