View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7303_low_7 (Length: 343)
Name: NF7303_low_7
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 51106488 - 51106165
Alignment:
| Q |
13 |
acatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagacct |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51106488 |
acatcattgatcatggtggagatataaatgcaaaagatcgtagtggctagacagcattgcattggagtgccgtacggggttctgttgaggttgcagacct |
51106389 |
T |
|
| Q |
113 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51106388 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccac |
51106289 |
T |
|
| Q |
213 |
attgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51106288 |
attgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtc |
51106189 |
T |
|
| Q |
313 |
ttctgttatttcttgatgtccatc |
336 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
51106188 |
ttctgttatttcttgatgtacatc |
51106165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 51115824 - 51115508
Alignment:
| Q |
13 |
acatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagacct |
112 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||| |||||| || ||||||||||||||||| || || |||| | ||||||||||||| || |
|
|
| T |
51115824 |
acatcatcgatcatggtggagatataaacgcaacagatcgtaatggccaaacggcattgcattggagtgcggttcgaggttgtattgaggttgcagagct |
51115725 |
T |
|
| Q |
113 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccac |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||| |
|
|
| T |
51115724 |
tttactcaaagagggtgctgaattgaattctgctgacaagtatgggtatcagacaacacatgttgcagctcaatatggtcatacagctttcctttaccat |
51115625 |
T |
|
| Q |
213 |
attgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtc |
312 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| || ||| |
|
|
| T |
51115624 |
cttgtttcaaaatggaacgctgagcctgatgttcctgataatgaaggaagaagccccttgcattgggctgcttacaaaggttttgctgattttatatgtc |
51115525 |
T |
|
| Q |
313 |
ttctgttatttcttgat |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
51115524 |
ttctgttatttcttgat |
51115508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 48033760 - 48033900
Alignment:
| Q |
24 |
catggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaag |
123 |
Q |
| |
|
|||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||||| || || |||||||||| || |||||| ||| |
|
|
| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
|
| Q |
124 |
agggtgctcaattgaattctgctgacaaggatgggtatcag |
164 |
Q |
| |
|
||||||||| | |||| ||||||||| | ||||||||||| |
|
|
| T |
48033860 |
agggtgctcgagtgaacgctgctgacatgaatgggtatcag |
48033900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 48034113 - 48034221
Alignment:
| Q |
170 |
acatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagccca |
269 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||| | || ||||||||||||||||||||||||| | || |||||| ||||||||| |||| |
|
|
| T |
48034113 |
acatgttgctgctcaatatggtcagacggctttcctttactatgttatttcaaaatggaatgctgaccctgatgctcctgataaagatggaagatgcccc |
48034212 |
T |
|
| Q |
270 |
ttgcattgg |
278 |
Q |
| |
|
||||||||| |
|
|
| T |
48034213 |
ttgcattgg |
48034221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 48035932 - 48035985
Alignment:
| Q |
277 |
gggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatg |
330 |
Q |
| |
|
||||||||| |||||||||| |||||| || |||||||||||||||||||||| |
|
|
| T |
48035932 |
gggctgcttacaaaggttttgctgattgtatacgtcttctgttatttcttgatg |
48035985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University