View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7303_low_9 (Length: 245)
Name: NF7303_low_9
Description: NF7303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7303_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 33518461 - 33518230
Alignment:
| Q |
3 |
tgtatatactttgaatattcttccattactaagatgtattcttgatatatctattatcactttacaagaattttacaaaggnnnnnnnnncactatttga |
102 |
Q |
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| T |
33518461 |
tgtatatactttgaatattct-ccattactaagatgtattcttgatatatctattatcactctacaagaattttacaaagaaaaaaaaaacactatttga |
33518363 |
T |
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| Q |
103 |
actcataaatgaatacatgagccannnnnnnaaaatacctaataacaaagaaaaggttcaatacgtttggttgactcgtttcttttccttttgttcagga |
202 |
Q |
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| T |
33518362 |
actcataaatgaatacatgagcctttttttttaaatacctaataacaaaaaaaaggttcaatacgtttggttgactcgtttcttttcctcttgttcagga |
33518263 |
T |
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| Q |
203 |
attgtttgattctattttgtggaatgatgtcca |
235 |
Q |
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| T |
33518262 |
attgtttgattctattttgtggaatgatgtcca |
33518230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 55447217 - 55447144
Alignment:
| Q |
162 |
aatacgtttggttgactcgtttcttttccttttgttcaggaattgtttgattctattttgtggaatgatgtcca |
235 |
Q |
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| T |
55447217 |
aatacatttggttgattcatttcgtatcctcttctttaggaattgtttgattctattttgtggaatgatgtcca |
55447144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 55447323 - 55447265
Alignment:
| Q |
5 |
tatatactttgaatattcttccattactaagatgtattcttgatatatctattatcact |
63 |
Q |
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| T |
55447323 |
tataaactttgaatattcttccatttttaagaagtatacttgatatacctattatcact |
55447265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 7045986 - 7046023
Alignment:
| Q |
196 |
ttcaggaattgtttgattctattttgtggaatgatgtc |
233 |
Q |
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| T |
7045986 |
ttcaggaattgtttgattctattttgtggaatgatgtc |
7046023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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