View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7304_low_2 (Length: 238)
Name: NF7304_low_2
Description: NF7304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7304_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 55259459 - 55259239
Alignment:
| Q |
1 |
tttattcttacaacaacaacaaccaatcaaaggtggtcgtttatgtttttgattcacccacgttattacaaatataaacaaagaaaacaaaacaggttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55259459 |
tttattcttacaacaacaacaaccaatcaaaggtggtcgtttatgtttttgattcacccacgttattacaaatataaacaaagaaaacaaaactggttgg |
55259360 |
T |
|
| Q |
101 |
gtcggttacagagtgtctcttaagaaacgtaagtatacataccttaccttagttcacctacctttaagaattgtggtcttctcaaattctcaaactttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55259359 |
gtcggttacagagtgtctcttaagaaacgtaagtatacataccttaccttagttcacctacctttaagaattgtggtcttctcaaattctcaaacattgt |
55259260 |
T |
|
| Q |
201 |
ttaaaattcttatacgtgtgt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
55259259 |
ttaaaattcttatacgtgtgt |
55259239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University