View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7305_high_3 (Length: 212)
Name: NF7305_high_3
Description: NF7305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7305_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1960141 - 1959952
Alignment:
| Q |
1 |
cctctcaatgcaattcaaaacttcttttacttctttggagcaatcttatccaagcacaccaaaatatttgagtacatcagctcagagatagatcccctcc |
100 |
Q |
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| T |
1960141 |
cctctcaatgcaattcaaaacttcttttacttctttggagcaatcttatcaaagcacaccaaaata----------------------tagatccccgcc |
1960064 |
T |
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| Q |
101 |
tttaacagaatcaccatcttttgcaacatgcagtcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtcc |
200 |
Q |
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| T |
1960063 |
tttaacagaatcaccatcttttgcaacatgcaatcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtcc |
1959964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 2023328 - 2023373
Alignment:
| Q |
167 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagaatcagt |
212 |
Q |
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| T |
2023328 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagt |
2023373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 5896842 - 5896692
Alignment:
| Q |
5 |
tcaatgcaattcaaaacttcttttacttctttggagcaatcttatccaagcacaccaaaatatttgagtacatcagctc--agagatagatcccctcctt |
102 |
Q |
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| T |
5896842 |
tcaatgtaattcaaaacttcttttacttctttggagcaatcttctccaagctcaccaaaatatttgagtacatccgcccaaagagatggatcccctcctt |
5896743 |
T |
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| Q |
103 |
taacagaatcacc--atcttttgcaacatgcagtcaatccctcgtgatcat |
151 |
Q |
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| T |
5896742 |
taactgaatcacccagtcttttgcagcatgcaattaatccgttgtgatcat |
5896692 |
T |
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