View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_high_1 (Length: 494)
Name: NF7308_high_1
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 478
Target Start/End: Original strand, 2238571 - 2239043
Alignment:
| Q |
9 |
aataagctggaaacaacatgtcataaggtgttttcaaacactcatctagacagtttcacaaatatttatgtcagatgataataagctgaaataagtcaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2238571 |
aataagctggaaacaacatgtcataaggtgttttcaaaaactcatctagacagtttcacaaatatttatgtcagatgataataagctgaattaagtcaat |
2238670 |
T |
|
| Q |
109 |
tcaaaacagacttgtg---aagaaatacatggttatgtaatgtattgttaaatacaatttgtggtatagcattggccatacgagtttcatgcattgcaat |
205 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2238671 |
tcaaaacagacctgtggtgaagaaatacatggttatgtaatgtattgttaaatacaatttgtggtatagcattggccatacgagtttcatgcattgcaat |
2238770 |
T |
|
| Q |
206 |
nnnnnnntatgactagcatgctcaatggacattgttacctcatattggccatattaggagttctacacattatcatttctcttgattgtaactttctact |
305 |
Q |
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| T |
2238771 |
aaaaaaatatgactagcatgctcaatggacattgttacctcatattggccatattaggagttctacacattatcatttctcttgattgtaactttctact |
2238870 |
T |
|
| Q |
306 |
ggttcatttgcaggtacataaggcctcaatttttctataacaaccctttgctttcttttattcaatatgttattggtccttacacggacgatctgggcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2238871 |
ggttcatttgcaggtacataaggcctcaatttttctataacaaccctttgctttcttttattcaatatgttattggtccttacacggacgatctgggcaa |
2238970 |
T |
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| Q |
406 |
tgtgttgccctatgctgtggaaggtgttggagttcccgttgatccactcgcatttgccggacttttaggtgcg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2238971 |
tgtgttgccctatgctgtggaaggtgttggagttcctgttgatccactcgcatttgccggacttttaggtgcg |
2239043 |
T |
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