View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_high_12 (Length: 216)
Name: NF7308_high_12
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 43814697 - 43814511
Alignment:
| Q |
14 |
aatattcagaaaagatgctttttggatatagctactcaagacaattgaggtgctagctcagtggtcacagcttagccttataacctcaagatacagtatt |
113 |
Q |
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| T |
43814697 |
aatattcagaaaagatgctttttggatatagctactcaagacaattgaggtgctagctcagtggtcacagcttagccttataacctcaagatacagtatt |
43814598 |
T |
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| Q |
114 |
caaaaccccgaagttgtaaaatggtcattagcccactaatgttatataagacaccgaagaaaggcagatggttcaggggtattgttg |
200 |
Q |
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| T |
43814597 |
caaaaccccgaagttgtaaaatggtcattagcccactaatgttatataagacaccgaagaaaggcagatggttcaggggtattgttg |
43814511 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 50892219 - 50892262
Alignment:
| Q |
60 |
gaggtgctagctcagtggtcacagcttagccttataacctcaag |
103 |
Q |
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| T |
50892219 |
gaggtgctagctcagtggtaagagcttagccttgtaacctcaag |
50892262 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 31584869 - 31584923
Alignment:
| Q |
49 |
tcaagacaattgaggtgctagctcagtggtcacagcttagccttataacctcaag |
103 |
Q |
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| T |
31584869 |
tcaatacaattgaggtgctagctcaatggtaagagcttagcattgtaacctcaag |
31584923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 36198988 - 36198938
Alignment:
| Q |
53 |
gacaattgaggtgctagctcagtggtcacagcttagccttataacctcaag |
103 |
Q |
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| T |
36198988 |
gacagttgaggtgctagcttagtggtaagagcttagccttgtaacctcaag |
36198938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 37531169 - 37531213
Alignment:
| Q |
58 |
ttgaggtgctagctcagtggtcacagcttagccttataacctcaa |
102 |
Q |
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| T |
37531169 |
ttgaggtgctagctcagtggtaagagtttagccttgtaacctcaa |
37531213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 32735013 - 32734957
Alignment:
| Q |
52 |
agacaattgaggtgctagctcagtggtcacagcttagccttataacctcaagataca |
108 |
Q |
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| T |
32735013 |
agacacttgaggtgctagctcagcggtgggagcttagccttctaacctcaaggtaca |
32734957 |
T |
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