View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_10 (Length: 345)
Name: NF7308_low_10
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 93 - 333
Target Start/End: Complemental strand, 17945055 - 17944815
Alignment:
| Q |
93 |
ttctcaggaggagttacttgattacatcaagcttcattcctggtggtggttttaaacactcgcaaaccatataannnnnnnnatttccattatttttggt |
192 |
Q |
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| T |
17945055 |
ttcttaggaggagttacttgattacatcaagcttcattcttggtggtggttttaaacactcgcaaaccatatcattttttttatttccattatttttggt |
17944956 |
T |
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| Q |
193 |
ccaacgttagtttgtattggttataacactatatatgtttgttgtttggctgtttgttcggcttttaattttgtattttatcactttgttctgatccctt |
292 |
Q |
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| T |
17944955 |
ccaacatcagtttgtattggttataccactatatatgtttgttgtttggctttttgttcggcttttacttttatattttgtcactttgttctgatccctt |
17944856 |
T |
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| Q |
293 |
ttagtcacatcttgtgcttgataggaactttttaatatatt |
333 |
Q |
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| T |
17944855 |
ttagtcatatcttgtgcttgataggaactttttaatatatt |
17944815 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 18460283 - 18460318
Alignment:
| Q |
298 |
cacatcttgtgcttgataggaactttttaatatatt |
333 |
Q |
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| T |
18460283 |
cacatcttgtgcttgataggacctttttaatatatt |
18460318 |
T |
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