View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_11 (Length: 333)
Name: NF7308_low_11
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 51376286 - 51376352
Alignment:
| Q |
248 |
actcagaaacgagaatagcatacataaactccatcattcatgacagcccacctagcattttccctat |
314 |
Q |
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| T |
51376286 |
actcagaaacgagaatagcatacataaactccatcattcatgacagcccacctagcattttccctat |
51376352 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 51376229 - 51376286
Alignment:
| Q |
149 |
tttccaatcctcttttagtcatttacataagtgttccttcaatacctattacctatga |
206 |
Q |
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| T |
51376229 |
tttccaatcctcttttattcatttacagaagtgttccttcaatacctattacctatga |
51376286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 51821074 - 51821029
Alignment:
| Q |
86 |
caagagtcaaatttctttcatgatggaataaaggcttacctaaaag |
131 |
Q |
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| T |
51821074 |
caagagtcaattttctttcatgatataataaagacttacctaaaag |
51821029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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