View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7308_low_12 (Length: 319)
Name: NF7308_low_12
Description: NF7308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7308_low_12 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 72 - 312
Target Start/End: Original strand, 27499615 - 27499855
Alignment:
| Q |
72 |
gtatcaactccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtca |
171 |
Q |
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| T |
27499615 |
gtatcaactccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtca |
27499714 |
T |
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| Q |
172 |
aagcttaatattgaaaggatagaaatagaaacgtttgtttttggttggcaatggtgcacatatccttgaagttgattcatataagtatagttcttaccca |
271 |
Q |
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| T |
27499715 |
aagcttaatattgaaatgatagaaatagaaacgtttgtttttagttggcaatggtgcacatatccttgaagttgattcatataagtatagttcctaccca |
27499814 |
T |
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| Q |
272 |
attaagggaatgattcatttgtagatgctcaatattcttcg |
312 |
Q |
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| T |
27499815 |
attaagggaatgattcatttgtagatgctcaatattattcg |
27499855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 27504305 - 27504226
Alignment:
| Q |
72 |
gtatcaactccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgatttt |
151 |
Q |
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| T |
27504305 |
gtatcaagtccttgcattcttgccctaagtcatcttctttcaagtattttggcagagtagggttttcatcacttgatttt |
27504226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 11439645 - 11439730
Alignment:
| Q |
72 |
gtatcaactccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatg |
157 |
Q |
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| T |
11439645 |
gtattaactccttgcattctttgcctaactcatcttcttgcaagtattttggcacaagagagttttcatcacctaattttgccatg |
11439730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 15460357 - 15460309
Alignment:
| Q |
72 |
gtatcaactccttgcattcttggcttaagtcatcatcttgcaagtattt |
120 |
Q |
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| T |
15460357 |
gtatcaactctttgcattctagggttatgtcatcttcttgcaagtattt |
15460309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 1835 - 1883
Alignment:
| Q |
72 |
gtatcaactccttgcattcttggcttaagtcatcatcttgcaagtattt |
120 |
Q |
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| T |
1835 |
gtatcaactctttgcattctagggttatgtcatcttcttgcaagtattt |
1883 |
T |
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